View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_130 (Length: 253)
Name: NF1304_low_130
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_130 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 10814629 - 10814801
Alignment:
| Q |
27 |
aaaaactggatatatggaaaatctaagtccaatgttccttcttaagctaataaagcacatataatgggaaattactcaaaaccagtactagaaatgcata |
126 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10814629 |
aaaaactggatatatggaaagtctaagtccaatgttccttctcaagctaataaagcacatataatgggaaattactcaaaaccagtactagaaatgcata |
10814728 |
T |
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| Q |
127 |
aagaatcaattttgaacaaacatgtt---------tctcttcaacaccgatttaagaaatgaatgttattatg |
190 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10814729 |
aagaatcaattttgaacaaacatgtttctctgaaatctcttcaacaccgatttaagaaatgaatgttattatg |
10814801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 19806560 - 19806681
Alignment:
| Q |
36 |
atatatggaaaatctaagtccaatgttccttcttaagctaataaagcacatataatgggaaattactcaaaaccagtactagaaatgcataaagaatcaa |
135 |
Q |
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| T |
19806560 |
atatatggaaaatctaagtccaatgttccttcttaagctaataaagcacatataatgggaaattactcaaaaccagtactagaaatccataaagaatcaa |
19806659 |
T |
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| Q |
136 |
ttttgaacaaacatgtttctct |
157 |
Q |
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||||||| |||||||||||||| |
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| T |
19806660 |
ttttgaataaacatgtttctct |
19806681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 10814816 - 10814857
Alignment:
| Q |
212 |
aaaaagaatagcatacatgagcctattttcataacaattaat |
253 |
Q |
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| T |
10814816 |
aaaaagaatagcatacatgagcctattttcataacaattaat |
10814857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 19575417 - 19575546
Alignment:
| Q |
28 |
aaaactggatatatggaaaatctaagtccaatgttccttcttaagctaataaagcacatataatgggaaattactcaaaaccagtactagaaatgcataa |
127 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19575417 |
aaaactggatatatgaaaaatctaagtccaatgttccttctcaagctaataaagcacatataatgggaaattactcaaaaccagtactagaaatgcataa |
19575516 |
T |
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| Q |
128 |
agaatcaattttgaacaaacatgtttctct |
157 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
19575517 |
agaatccattttgaacaaacatgtttctct |
19575546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 14368139 - 14368010
Alignment:
| Q |
28 |
aaaactggatatatggaaaatctaagtccaatgttccttcttaagctaataaagcacatataatgggaaattactcaaaaccagtactagaaatgcataa |
127 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
14368139 |
aaaactggatatatggaaaatctaagtccaatgttccttctcaagctaataaagcacatataatgggaaattactcaaaatcagtactagaaatgcagaa |
14368040 |
T |
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| Q |
128 |
agaatcaattttgaacaaacatgtttctct |
157 |
Q |
| |
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|||||| ||||||||||||||||||||||| |
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| T |
14368039 |
agaatccattttgaacaaacatgtttctct |
14368010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 18975135 - 18975004
Alignment:
| Q |
26 |
caaaaactggatatatggaaaatctaagtccaatgttccttcttaagctaataaagcacatataatgggaaattactcaaaaccagtactagaaatgcat |
125 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18975135 |
caaaatctgaatatatggaaaatctaagtccaatgttccttctcaagctaataaagcacatataatgggaaattactcaaaaccagtactagaaatccat |
18975036 |
T |
|
| Q |
126 |
aaagaatcaattttgaacaaacatgtttctct |
157 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
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| T |
18975035 |
aaagaatcaattttgaataaacatgtttctct |
18975004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 14367964 - 14367924
Alignment:
| Q |
213 |
aaaagaatagcatacatgagcctattttcataacaattaat |
253 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14367964 |
aaaagaatagcatacatgagcctattttcataacacttaat |
14367924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 5330739 - 5330870
Alignment:
| Q |
26 |
caaaaactggatatatggaaaatctaagtccaatgttccttcttaagctaataaagcacatataatgggaaattactcaaaaccagtactagaaatgcat |
125 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5330739 |
caaaatctgaatatatggaaaatctaagtccaatgttccttctcaagctaataaagcacatataatgggaaattactcaaaaccagtactagaaatccat |
5330838 |
T |
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| Q |
126 |
aaagaatcaattttgaacaaacatgtttctct |
157 |
Q |
| |
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||||||||||||||||| |||||||||||||| |
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|
| T |
5330839 |
aaagaatcaattttgaataaacatgtttctct |
5330870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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