View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1304_low_14 (Length: 601)

Name: NF1304_low_14
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1304_low_14
NF1304_low_14
[»] chr1 (5 HSPs)
chr1 (30-589)||(48475779-48476335)
chr1 (347-499)||(34588178-34588333)
chr1 (45-193)||(40963423-40963582)
chr1 (418-499)||(17304481-17304562)
chr1 (347-395)||(34588384-34588432)
[»] chr7 (1 HSPs)
chr7 (347-571)||(27857126-27857344)
[»] chr4 (5 HSPs)
chr4 (308-499)||(48813519-48813713)
chr4 (308-499)||(47997214-47997408)
chr4 (334-412)||(12389791-12389869)
chr4 (308-395)||(40142786-40142873)
chr4 (351-492)||(16047491-16047639)
[»] chr6 (1 HSPs)
chr6 (325-499)||(29092120-29092297)
[»] chr3 (4 HSPs)
chr3 (308-499)||(13857754-13857948)
chr3 (347-499)||(5937499-5937654)
chr3 (308-499)||(5931742-5931936)
chr3 (347-395)||(13857694-13857742)


Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 30 - 589
Target Start/End: Complemental strand, 48476335 - 48475779
Alignment:
Q  30 acatacatgttaaagattctgttattgctgcaactaaccatattattcaagattgcaaaccttgaatgtagtttacgtctctcatataagtagaaccttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48476335 acatacatgttaaagattctgttattgctgcaactaaccatattattcaagattgcaaaccttgaatgtagtttacgtctctcatataagtagaaccttg 48476236  T
Q  130 aatgtttagggtcgtgaacttgttgattgaaacccttgttagtttcatagacttggttggggaacccccacnnnnnnnnnnctttcttttctatacttca 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||| ||    
T  48476235 aatgtttagggtcgtgaacttgttgattgaaacccttgttagtttcatagacttggttggggaacccccacttttttt----tttcttttctatactcca 48476140  T
Q  230 cagtgtaatattccttttgtttcagtttgaatgaactggataaaaattttaaaaatttgcaatagaagtatatcttggcatcaacattagagtgtataag 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48476139 cagtgtaatattccttttgtttcagtttgaatgaactggataaaaattttaaaaatttgcaatagaagtatatcttggcatcaacattagagtgtataag 48476040  T
Q  330 tcacaagagcttactg-tttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaatcattatttagttactctcagcacatacttgcat 428  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48476039 tcacaagagcttactgctttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaatcattatttagttactctcagcacatacttgcat 48475940  T
Q  429 aagttaatagtatcaagatccttccaagtaaaattattataatggtaacacaaaataaagctaaatatttaaaatgaaatagcagacatcttctttcttt 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48475939 aagttaatagtatcaagatccttccaagtaaaattattataatggtaacacaaaataaagctaaatatttaaaatgaaatagcagacatcttctttcttt 48475840  T
Q  529 caacaagtggcaaataactttaaccttgaagtcctagttgatccttgtctatatgaatatt 589  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  48475839 caacaagtggctaataactttaaccttgaagttctagttgatccttgtctatatgaatatt 48475779  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 347 - 499
Target Start/End: Complemental strand, 34588333 - 34588178
Alignment:
Q  347 ttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaatcattatttagttactctcagca---catacttgcataagttaatagtatca 443  Q
    ||||||||||||||||| ||||||| ||| ||| ||||||||| ||||| |||  |||||||||| ||  |   |||||||||||||||||||||  |||    
T  34588333 ttaagtaacaataaaatcaacttcattttgaagcataaagatgcacaataattccttagttactcacaatacatcatacttgcataagttaatagagtca 34588234  T
Q  444 agatccttccaagtaaaattattataatggtaacacaaaataaagctaaatattta 499  Q
    | ||||||||||  |||| ||||| |||   || ||||||||||||||||| ||||    
T  34588233 acatccttccaaagaaaactattacaataacaaaacaaaataaagctaaatgttta 34588178  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 40963582 - 40963423
Alignment:
Q  45 attctgttattgctgcaactaaccatattattcaagattgcaaaccttgaatgtagtt-tacgtctctcatataagta----gaaccttgaat-----gt 134  Q
    ||||| |||||||||||||| ||||||||||||||||||||||   || |  | |||| | |||||||||||||||||    |||||||||||     ||    
T  40963582 attctcttattgctgcaactgaccatattattcaagattgcaaggatttagcg-agttgttcgtctctcatataagtaagtagaaccttgaattgaatgt 40963484  T
Q  135 ttagggtcgtgaacttgttgattga--aacccttgttagtttcatagacttggttggggaa 193  Q
     |||| |||||||||||||| || |  || |||||||||||||||||||||||||||||||    
T  40963483 ataggctcgtgaacttgttggtttagcaaaccttgttagtttcatagacttggttggggaa 40963423  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 499
Target Start/End: Complemental strand, 17304562 - 17304481
Alignment:
Q  418 catacttgcataagttaatagtatcaagatccttccaagtaaaattattataatggtaacacaaaataaagctaaatattta 499  Q
    |||||||||||||||||||||  |||| ||||||||||  |||| ||||| |||   || ||||||||||||||||| ||||    
T  17304562 catacttgcataagttaatagagtcaacatccttccaaagaaaactattacaataacaagacaaaataaagctaaatgttta 17304481  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 34588432 - 34588384
Alignment:
Q  347 ttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaat 395  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||| |||||    
T  34588432 ttaagtaacaataaaatcaacttcagtttgaagcataaagatgcacaat 34588384  T

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Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 347 - 571
Target Start/End: Original strand, 27857126 - 27857344
Alignment:
Q  347 ttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaatcattatttagttactctcagca---catacttgcataagttaatagtatca 443  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| ||||| |||  |||||||||||||  |   |||||||||||||||||||||  |||    
T  27857126 ttaagtaacaataaaatcaacttcagtttgaagtataaagatgcacaataattccttagttactctcaatagatcatacttgcataagttaatagagtca 27857225  T
Q  444 agatccttccaagtaaaattattataatggtaacacaaaataaagctaaatatttaaaatgaaatagcagacatcttctttctttcaacaagtggcaaat 543  Q
    | ||||||||||  |||| ||||| ||||| || ||||||||||||||||| ||||      |||||||||||||    |||| ||||||||| || |||    
T  27857226 acatccttccaaagaaaactattacaatggcaaaacaaaataaagctaaatgttta-----taatagcagacatc----ttctctcaacaagtagctaat 27857316  T
Q  544 aactttaaccttgaagtcctagttgatc 571  Q
    ||||| ||| ||||||||| | ||||||    
T  27857317 aacttcaactttgaagtccaaattgatc 27857344  T

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Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 308 - 499
Target Start/End: Complemental strand, 48813713 - 48813519
Alignment:
Q  308 catcaacattagagtgtataagtcacaagagcttactgtttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaatcattatttagtt 407  Q
    ||||||||| ||||   |||| ||||||||||||| |  ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||  ||| ||    
T  48813713 catcaacataagagcacataattcacaagagcttaatccttaagtaacaataaaatcaacttcagtttgaagtataaagatgcacaatcattccttactt 48813614  T
Q  408 actctcagca---catacttgcataagttaatagtatcaagatccttccaagtaaaattattataatggtaacacaaaataaagctaaatattta 499  Q
    |||||||  |   ||||||||||||||| |||||  |||| |||||||||| ||||| ||||| ||| | || ||||||||||||||||| ||||    
T  48813613 actctcaatacatcatacttgcataagtaaatagggtcaacatccttccaaataaaactattacaatagcaaaacaaaataaagctaaatgttta 48813519  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 308 - 499
Target Start/End: Original strand, 47997214 - 47997408
Alignment:
Q  308 catcaacattagagtgtataagtcacaagagcttactgtttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaatcattatttagtt 407  Q
    ||||||||| ||||   |||| ||||||||| ||| |  ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||  ||||||    
T  47997214 catcaacataagagcacataattcacaagagtttaatccttaagtaacaataaaatcaacttcagtttgaagtataaagatgcacaatcattccttagtt 47997313  T
Q  408 actctcagca---catacttgcataagttaatagtatcaagatccttccaagtaaaattattataatggtaacacaaaataaagctaaatattta 499  Q
    |||||||  |   |||||||||||||||||||||  |||| |||||| ||| ||||| ||||| |||||  | ||||||||||| ||||| ||||    
T  47997314 actctcaatacatcatacttgcataagttaatagggtcaacatcctttcaaataaaactattacaatggctaaacaaaataaagttaaatgttta 47997408  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 334 - 412
Target Start/End: Original strand, 12389791 - 12389869
Alignment:
Q  334 aagagcttactgtttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaatcattatttagttactct 412  Q
    ||||||||| |  ||||||||||||||||| ||||||||||| ||||||||||||| ||||| |||  |||||||||||    
T  12389791 aagagcttaatccttaagtaacaataaaatcaacttcagtttgaagtataaagatgcacaataattccttagttactct 12389869  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 395
Target Start/End: Complemental strand, 40142873 - 40142786
Alignment:
Q  308 catcaacattagagtgtataagtcacaagagcttactgtttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaat 395  Q
    ||||||||| ||||   |||| ||| ||||||||| |  ||||||||||||||||| ||||||||||| ||||||||||||| |||||    
T  40142873 catcaacataagagcacataaatcataagagcttaatccttaagtaacaataaaatcaacttcagtttgaagtataaagatgcacaat 40142786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 16047639 - 16047491
Alignment:
Q  351 gtaacaataaaatgaacttcagtttaaagtata---aagatgtacaatcattatttagttactctcagca---catacttgcataagttaatagtatcaa 444  Q
    ||||||||||||| ||||||||||| |||||||   |||| | ||||| |||  |||||||||| ||  |   |||||||||||||||||||||  ||||    
T  16047639 gtaacaataaaatcaacttcagtttgaagtataaagaagaggcacaataatttcttagttactcacaatacatcatacttgcataagttaatagcgtcaa 16047540  T
Q  445 gat-ccttccaagtaaaattattataatggtaacacaaaataaagctaa 492  Q
     || ||||||||  |||| ||||| ||||| || ||||||| |||||||    
T  16047539 catcccttccaaagaaaactattacaatggcaaaacaaaatcaagctaa 16047491  T

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Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 325 - 499
Target Start/End: Complemental strand, 29092297 - 29092120
Alignment:
Q  325 ataagtcacaagagcttactgtttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaatcattatttagttactctcagca---cata 421  Q
    |||| ||| ||||||||| |  ||||||||||||||||| ||||||||||| ||||||||||||| |||||  ||  |||||||||||||  |   ||||    
T  29092297 ataaatcataagagcttaatccttaagtaacaataaaatcaacttcagtttgaagtataaagatgcacaatagttccttagttactctcaatacatcata 29092198  T
Q  422 cttgcataagttaatagtatcaagatccttccaagtaaaattattataatggtaacacaaaataaagctaaatattta 499  Q
    |||||||||||||||||  |||| ||||||||||  |||| ||||| ||||| || ||||||||||||||||| ||||    
T  29092197 cttgcataagttaatagagtcaacatccttccaaagaaaactattacaatggcaaaacaaaataaagctaaatgttta 29092120  T

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Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 308 - 499
Target Start/End: Original strand, 13857754 - 13857948
Alignment:
Q  308 catcaacattagagtgtataagtcacaagagcttactgtttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaatcattatttagtt 407  Q
    ||||||||| ||||  ||||| ||| ||||| ||| |  ||||||||||||||||| ||||||||||| ||| ||||||||| ||||| |||  ||||||    
T  13857754 catcaacataagagcatataaatcataagagtttaatccttaagtaacaataaaatcaacttcagtttgaagcataaagatgcacaataattccttagtt 13857853  T
Q  408 actctcagca---catacttgcataagttaatagtatcaagatccttccaagtaaaattattataatggtaacacaaaataaagctaaatattta 499  Q
    |||||||  |   |||||||||||||||||||||  |||| ||||||||||  |||| ||||| ||||  || ||||||||||||||||| ||||    
T  13857854 actctcaatacatcatacttgcataagttaatagagtcaacatccttccaaagaaaactattacaatgacaaaacaaaataaagctaaatgttta 13857948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 347 - 499
Target Start/End: Complemental strand, 5937654 - 5937499
Alignment:
Q  347 ttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaatcattatttagttactctcagca---catacttgcataagttaatagtatca 443  Q
    ||||||||||||||||| ||||||||||| ||| ||||| ||| ||||| |||  |||||||||||||  |   |||||||||||||||||||||  |||    
T  5937654 ttaagtaacaataaaatcaacttcagtttgaagcataaaaatgcacaataattccttagttactctcaatacatcatacttgcataagttaatagagtca 5937555  T
Q  444 agatccttccaagtaaaattattataatggtaacacaaaataaagctaaatattta 499  Q
    | ||||||||||  |||| ||||| ||||| || ||||||||||||||||| ||||    
T  5937554 acatccttccaaagaaaactattacaatggcaaaacaaaataaagctaaatgttta 5937499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 308 - 499
Target Start/End: Original strand, 5931742 - 5931936
Alignment:
Q  308 catcaacattagagtgtataagtcacaagagcttactgtttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaatcattatttagtt 407  Q
    ||||||||| ||||   |||| ||| ||||||||| |  ||||||||||||||||| ||||||||||| ||| |||||||||  |||| |||  ||||||    
T  5931742 catcaacataagagcacataaatcataagagcttaatccttaagtaacaataaaatcaacttcagtttgaagcataaagatgcccaataattccttagtt 5931841  T
Q  408 actctcagca---catacttgcataagttaatagtatcaagatccttccaagtaaaattattataatggtaacacaaaataaagctaaatattta 499  Q
    |||||||  |   |||||||| ||||||||||||  |||| ||||||||||  |||| ||||| ||||| || ||||||||||||||||| ||||    
T  5931842 actctcaatacatcatacttggataagttaatagagtcaacatccttccaaagaaaactattacaatggcaaaacaaaataaagctaaatgttta 5931936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 13857694 - 13857742
Alignment:
Q  347 ttaagtaacaataaaatgaacttcagtttaaagtataaagatgtacaat 395  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||| |||||    
T  13857694 ttaagtaacaataaaatcaacttcagtttgaagcataaagatgcacaat 13857742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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