View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_141 (Length: 251)
Name: NF1304_low_141
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_141 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 2786907 - 2786666
Alignment:
| Q |
11 |
cagagagttaaacaagagatttgctttgaaaatcacttttttgcatgtcaggaaatgctaagggggcttcattgtgtacaatatcacataactcgaaatg |
110 |
Q |
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| T |
2786907 |
cagagagttaaacaagagatttgctttgaaaatcacttttttgcatgtcaggaaatgctaagggggcttcattgtgtacaatatcacataactccaaatg |
2786808 |
T |
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| Q |
111 |
aggctccatttaccctaaacatcttgtagaaggaaacaccatctacaaattcattgaagagacaaacaatagaactaggcaaaacattagattcaatagt |
210 |
Q |
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| T |
2786807 |
aggctccatttaccctaaacatcttgtagaaggaaacaccatctacaaattcattgaagagacaaacaatagaactaggcaaaacattagattcaatagt |
2786708 |
T |
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| Q |
211 |
cacacacaaatcatca-aagaaacatatggagatttaccaat |
251 |
Q |
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| T |
2786707 |
cacacgcaaatcatcagaagaaacatatggagatttaccaat |
2786666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 27743483 - 27743252
Alignment:
| Q |
23 |
caagagatttgctttgaaaatcacttttttgcatgtcaggaaatgctaagggggcttcattgtgtacaatatcacataactcgaaatga--ggctccatt |
120 |
Q |
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| T |
27743483 |
caagagattttctttgaaaatcactcttttgcatgtcaggaaatgctaagggggcttcattgtgaacaatatcacataactccaaatcataggctccatt |
27743384 |
T |
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| Q |
121 |
taccctaaacatcttgtagaaggaaacaccatctacaaattcattgaagagacaaacaatagaactaggcaaaacattagattcaatagtcacacacaaa |
220 |
Q |
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| T |
27743383 |
tcccctaaacatcttgtagaaggaaacaccatctacaaattcattgaagagacaaacaatagaactaggcaaggcattagattcagtagtcacacataaa |
27743284 |
T |
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| Q |
221 |
tcatca-aagaaacatatggagatttaccaat |
251 |
Q |
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| T |
27743283 |
tcagcaggagaaacatatggagatttaccaat |
27743252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 11463224 - 11463280
Alignment:
| Q |
125 |
ctaaacatcttgtagaaggaaacaccatctacaaattcattgaagagacaaacaata |
181 |
Q |
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| T |
11463224 |
ctaaacatcttattgatggaaacaacatccacaaattccttgaagaaacaaacaata |
11463280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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