View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1304_low_149 (Length: 248)

Name: NF1304_low_149
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1304_low_149
NF1304_low_149
[»] chr4 (2 HSPs)
chr4 (73-138)||(2923686-2923755)
chr4 (206-248)||(2921078-2921120)
[»] chr2 (3 HSPs)
chr2 (157-194)||(22482221-22482258)
chr2 (157-194)||(22482881-22482918)
chr2 (160-196)||(15285665-15285701)
[»] chr3 (3 HSPs)
chr3 (157-186)||(46753292-46753321)
chr3 (160-196)||(22242928-22242964)
chr3 (160-196)||(22243125-22243161)
[»] chr1 (1 HSPs)
chr1 (159-192)||(23729491-23729524)


Alignment Details
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 2923755 - 2923686
Alignment:
Q  73 gggaagttttgtttttt-agagaaagagagaaactatgggtgt---taggtgaagaaattactttaaaca 138  Q
    ||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  2923755 gggaagttttgtttttttagagaaagagagaaactatgggtgtaggtaggtgaagaaattactttaaaca 2923686  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 2921120 - 2921078
Alignment:
Q  206 ttgcaaacatgatttatcaataaaattgcacattaatttaatt 248  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  2921120 ttgccaacatgattcatcaataaaattgcacattaatttaatt 2921078  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 22482258 - 22482221
Alignment:
Q  157 aaataggtgtaggatgctaatgcacaccttcgaaaatt 194  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  22482258 aaataggtgtaggatgctaatgcacaccttctaaaatt 22482221  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 22482881 - 22482918
Alignment:
Q  157 aaataggtgtaggatgctaatgcacaccttcgaaaatt 194  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  22482881 aaataggagtaggatgctaatgcacaccttctaaaatt 22482918  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 15285665 - 15285701
Alignment:
Q  160 taggtgtaggatgctaatgcacaccttcgaaaattga 196  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  15285665 taggtgtaggatgctaatgcacacattctaaaattga 15285701  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 46753321 - 46753292
Alignment:
Q  157 aaataggtgtaggatgctaatgcacacctt 186  Q
    ||||||||||||||||||||||||||||||    
T  46753321 aaataggtgtaggatgctaatgcacacctt 46753292  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 22242964 - 22242928
Alignment:
Q  160 taggtgtaggatgctaatgcacaccttcgaaaattga 196  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  22242964 taggtgtaggatgctaatgcacatcttctaaaattga 22242928  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 22243125 - 22243161
Alignment:
Q  160 taggtgtaggatgctaatgcacaccttcgaaaattga 196  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  22243125 taggtgtatgatgctaatgcacaccttctaaaattga 22243161  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 23729524 - 23729491
Alignment:
Q  159 ataggtgtaggatgctaatgcacaccttcgaaaa 192  Q
    ||||||||||||||||||||||||||||| ||||    
T  23729524 ataggtgtaggatgctaatgcacaccttctaaaa 23729491  T

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