View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_17 (Length: 558)
Name: NF1304_low_17
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 214 - 547
Target Start/End: Original strand, 38007183 - 38007516
Alignment:
| Q |
214 |
atcgcaatttaaaactattcaagacaactcttgaatgtaagttatgtaacacatgagtgaatttatttcatttaaatttgtaaacttaaatttgtaaatt |
313 |
Q |
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| T |
38007183 |
atcgcaatttaaaactattcaagacaactcttgaatgtaagttatgtaacacatgagtgaatttatttcatttaaatttgtaaacttaaatttgtaaatt |
38007282 |
T |
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| Q |
314 |
tagaaatataatagaagagaatcaagtttaattaattaacccactagcatagttgctctaatttctaacattccttttgaaacatggttcttcttgatga |
413 |
Q |
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| T |
38007283 |
tagaaatataatagaagagaatcaagtttaattaattaacccactagcatagttgctctaatttctaacattccttttgaaacatggttcttcttgatga |
38007382 |
T |
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| Q |
414 |
ctacttttagtccatgaatgccaagttacaaaacttttgaatttgaatcttttagtataaaattcaactacatgaccataactactcaagggaggaaatg |
513 |
Q |
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| T |
38007383 |
ctacttttagtccatgaatgccaagttacaaaacttttgaatttgaatcttttagtataaaattcaactacatgaccataactactcaagggaggaaatg |
38007482 |
T |
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| Q |
514 |
tgtcatcgcagtcgactccatattattgagtata |
547 |
Q |
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| T |
38007483 |
cgtcatcgcagtcgactccatattattgagtata |
38007516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 38006980 - 38007131
Alignment:
| Q |
30 |
tgtttcactcaattcaaacaaacctaggacacaaaatctacaaatatatatactagtacatccatacacgactatttatagccagttttaaattgtgttt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38006980 |
tgtttcactcaattcaaacaaacctaggacacaaaatctacaaatat--atactagtacatccatacacgactatttatagccagttttaaattgcgttt |
38007077 |
T |
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| Q |
130 |
gagatcaaagatgcagttatgtcacgatcttagctaaagtagaagattgcaact |
183 |
Q |
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| T |
38007078 |
gagatcaaagatgcagttatgtcacgatcttagctaaagtagaagattgcaact |
38007131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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