View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_20 (Length: 546)
Name: NF1304_low_20
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 29 - 546
Target Start/End: Original strand, 3902345 - 3902854
Alignment:
| Q |
29 |
ataaggttcctacaagactacccgctcccttactggagatgattcttttggacttcacattctcagggtcatcccttcacattgcctaaagagcgatatt |
128 |
Q |
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| T |
3902345 |
ataaggttcctacaagactacccgctcccttactggagatgattcttttggacttcacattctcagggtcatcccttcacattgcctaaagagcgatatt |
3902444 |
T |
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| Q |
129 |
atagttgtgagagcaaggacatgatgtggcttaaggacagaccaatgaaaggtcggtatgtacttttgtacttttgacgatgttggcagatttagacaat |
228 |
Q |
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| T |
3902445 |
atagttgtgagagcaaggacatgatgtggcttaaggacagaccaatgaaaggtcggtatgta--------cttttgacgatgttggcagatttagacaat |
3902536 |
T |
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| Q |
229 |
aagtgatcataccaatgcgttcaaggacttaacaaacctaagaatcgtttgagcagcaacttgtttttgtagtgtggttgactaggaactgtgacttggc |
328 |
Q |
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| T |
3902537 |
aagtgatcataccaatgcgttcaaggacttaacaaacctaagaatcgtttgagcagcaacttgtttttgtagtgtggttgactaggaactgtgacttggc |
3902636 |
T |
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| Q |
329 |
gataggggatgtaaatgaacataaacccatgagccagtcaaatgcccgccaaccttcatttgggcttgcacattggccaagttatgcttcactttggaga |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3902637 |
gataggggatgtaaatgaacataaacccatgagccagtcaaatgcccgccaaccttcatttgggcttgcacattggccaagttatgcttcactttggaga |
3902736 |
T |
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| Q |
429 |
ggatttggtcgtaggacaggagtaacatcaatggtcgaagtaatagcaacataatgctacaacgtataaagaggagagggagaccatagatgaacctcat |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3902737 |
ggatttggtcgtaggacaggagtaacatcaatggtcgaagtaatagcaacataatgctacaacgcataaagaggagagggagaccatagatgaacctcat |
3902836 |
T |
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| Q |
529 |
agggggtgaggttggtgt |
546 |
Q |
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| T |
3902837 |
agggggtgaggttggtgt |
3902854 |
T |
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