View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_23 (Length: 539)
Name: NF1304_low_23
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 8e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 23622071 - 23621892
Alignment:
| Q |
21 |
cataaaaagctaaaaggaccaaatataagggacggatgtagtaatattgtaacatctcaattttcagaccggtagtggtgaaatttcaaactctaaatgc |
120 |
Q |
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| T |
23622071 |
cataaaaagctaaaaggaccaaatataagggacggatgtagcaatattgtaacatctcaattttcagagcggtagtggtgaaatttcaaactctaaatgc |
23621972 |
T |
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| Q |
121 |
ggaataatttgaaaacagttacttttaatcacctttacaaaaatctgtataatgcaagtaagtcatacactaaaatacct |
200 |
Q |
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| T |
23621971 |
ggaataatttgaaaacagttacttttaatcacctttacaaaaatctgtataatgcaagtaagtcagacactaaaatacct |
23621892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 49 - 177
Target Start/End: Complemental strand, 23618041 - 23617913
Alignment:
| Q |
49 |
gggacggatgtagtaatattgtaacatctcaattttcagaccggtagtggtgaaatttcaaactctaaatgcggaataatttgaaaacagttacttttaa |
148 |
Q |
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| T |
23618041 |
gggacggatgtagaaatattgtaacatctcaactttcggagcggtggtggtgaaattttaaactctaaatttgaaataatttgaaaaccattactcttaa |
23617942 |
T |
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| Q |
149 |
tcacctttacaaaaatctgtataatgcaa |
177 |
Q |
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| T |
23617941 |
tcgcctttacaaaaatctgtataatgcaa |
23617913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 23618099 - 23618043
Alignment:
| Q |
22 |
ataaaaagctaaaaggaccaaatataagggacggatgtagtaatattgtaacatctc |
78 |
Q |
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| T |
23618099 |
ataaaaggctaaaaggaccaaaaattagggatggatgtagaaatattgtaacatctc |
23618043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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