View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1304_low_25 (Length: 527)
Name: NF1304_low_25
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 30 - 468
Target Start/End: Original strand, 47112518 - 47112949
Alignment:
| Q |
30 |
attggtatgtgacagatagagaatgctcgacattggacatatagttgtaattgcgacggtgacagaagaatggatttccacctcaattggagctggtcct |
129 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47112518 |
attggtatgtgacagatagagcatggtcgacattgggcatatagttgtaattgcgacggtgacagaagaatggatttccacctcaattggagctggtcct |
47112617 |
T |
|
| Q |
130 |
cctcctaaaaagggcataggggttataaaaacattatattttcaacactctttcgaacactcatttgtttatta--ttagatgtaattcaccaatatggt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||||||||||||||||| |
|
|
| T |
47112618 |
cctcctaaaaagggcataggggttataaaaacattatattttcaacactcttttg---------tttattattagattagatgtaattcaccaatatggt |
47112708 |
T |
|
| Q |
228 |
aatatcctactcaaactagatagagcatagtaacaaattttaaatcaagtcttcaaatctgcatttgatatatagcagctccaatgctcgaagctcatat |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47112709 |
aatatcctactcaaactagatagagcatagtaacaaattttaaatcaagtcttcaaatctgcatttgatatatagcagctccaattctcgaagctcatat |
47112808 |
T |
|
| Q |
328 |
tcgttcttgccagcaataaagccttagggcataagagttgacaagctctctccaaaagtgtcagatcggttcaagagtaaggttactaaaatcatagttt |
427 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
47112809 |
tcgttcttgccagcaataaagccttaggccataagagttgacaagctctctccaaaagtgtcagatcggttcgagagtaaggttactaaaatcattgttt |
47112908 |
T |
|
| Q |
428 |
taggtctattgataaaaaattatttgtcattagtttttata |
468 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
47112909 |
taggtctactgataaaaaattatttgtcattaatttttata |
47112949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University