View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1304_low_26 (Length: 526)
Name: NF1304_low_26
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 21 - 505
Target Start/End: Original strand, 19840478 - 19840962
Alignment:
| Q |
21 |
acatcatcatccttaccaccacagccaattaaagaaagtaataaaagggtgtttagaggtataagaacaaggccatgggggaaatttgcggcggagataa |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19840478 |
acatcatcatccttaccaccacagccaattaaagaaagtaataaaagggtgtttagaggtataagaacaaggccatgggggaaattcgcggcggagataa |
19840577 |
T |
|
| Q |
121 |
gggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgcgtatttagcaagagg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19840578 |
gggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgcttatttagcaagagg |
19840677 |
T |
|
| Q |
221 |
ttcattggctgtgttgaattttccagaagaagtagttaaagaatcactcaaagaaatgtctagaaattctaagcctttggaagaaggtacttcgcctgtg |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19840678 |
ttcattggctgtgttgaattttccagaagaagtagttaaagaatcactcaaagaaatgtctagaaattctaagcctttggaagaaggtacttcgcctgtg |
19840777 |
T |
|
| Q |
321 |
ttggcaataaagagaaaacacgtaatgaggaaatcacccaataaggttagtnnnnnnnnnnttaaaactgatcatcatagtgatcgaattcagagagaaa |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19840778 |
ttggcaataaagagaaaacacgtaatgaggaaatcacccaataaggttagtaaaaaaaaaattaaaactgatcatcatagtgatcgaattcagagagaaa |
19840877 |
T |
|
| Q |
421 |
ccaatactaaatctcaaaatgtgtttgtgtttgaggatttgggttcagaatatctggagtatttattgagcttgacatcttaggg |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19840878 |
ccaatactaaatctcaaaatgtgtttgtgtttgaggatttgggttcagaatatctggagtatttattgagcttgacatcttaggg |
19840962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 45 - 503
Target Start/End: Complemental strand, 19720091 - 19719627
Alignment:
| Q |
45 |
ccaattaaagaaagtaataaaagggtgtttagaggtataagaacaaggccatgggggaaatttgcggcggagataagggactcaacaagaaaaggggcta |
144 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
19720091 |
ccaattaaagaaagtaacacaagggtatttagaggagtacgaagaaggccatgggggaaattcgcggcggagataagggactcaacaagaaaaggggcta |
19719992 |
T |
|
| Q |
145 |
gagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgcgtatttagcaagaggttcattggctgtgttgaattttcc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| |||||||||||||| |
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|
| T |
19719991 |
gagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagctgcttttttagcaagaggttcattggcagtgttgaattttcc |
19719892 |
T |
|
| Q |
245 |
agaagaagtagttaaagaatcactcaaagaaatgtctagaaattctaagcctttggaagaaggta------cttcgcctgtgttggcaataaagagaaaa |
338 |
Q |
| |
|
||| || ||||||||||||| ||||||||||||| ||||||||||| ||||||| |||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
19719891 |
agaggatgtagttaaagaattactcaaagaaatggctagaaattctgagcctttagaagaaggtacttctacttcccctgtgttggcaataaagagaaaa |
19719792 |
T |
|
| Q |
339 |
cacgtaatgaggaaatcacccaataaggttagtnnnnnnnnnnttaaaactgatcatcatagtgatcgaattcagagagaaaccaatactaaatctcaaa |
438 |
Q |
| |
|
|| | | ||| |||||||||||||||||||| | |||||||||||| || ||||||||| ||||||| ||||||||||||||| ||| |
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|
| T |
19719791 |
tacatcaagagaaaatcacccaataaggttagcaaaaagaaaatgaaaactgatcataatggtgatcgaacaaagagagagaccaatactaaatctaaaa |
19719692 |
T |
|
| Q |
439 |
atgtgtttgtgtttgaggatttgggttcagaatatctggagtatttattgagcttgacatcttag |
503 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||||||| ||| | |||||||||| || |||||| |
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|
| T |
19719691 |
atgtgtttgtgtttgaagatttgggtgctgaatatcttgagcaactattgagcttaacttcttag |
19719627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 25 - 338
Target Start/End: Complemental strand, 19893002 - 19892689
Alignment:
| Q |
25 |
catcatccttaccaccacagccaattaaagaaagtaataaaagggtgtttagaggtataagaacaaggccatgggggaaatttgcggcggagataaggga |
124 |
Q |
| |
|
|||||||||| |||| || |||||||||||||||| ||||||||| ||||||| || ||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
19893002 |
catcatccttgccactaccagcaattaaagaaagtaacaaaagggtgcttagaggagtacgaagaaggccatgggggaaattcgcggccgagataaggga |
19892903 |
T |
|
| Q |
125 |
ctcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgcgtatttagcaagaggttca |
224 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| | || ||||| ||||||| |
|
|
| T |
19892902 |
ctcgacaagaaaaggggctagggtatggcttggaacattcaacacggaggaagaagccgctttagcttatgaccaagccgctttttcagcaaaaggttca |
19892803 |
T |
|
| Q |
225 |
ttggctgtgttgaattttccagaagaagtagttaaagaatcactcaaagaaatgtctagaaattctaagcctttggaagaaggtacttcgcctgtgttgg |
324 |
Q |
| |
|
||||| |||||||||||||| || || ||||||||||| ||||||||||||||| ||| ||||||| ||||||| |||||||||||||| |||||||||| |
|
|
| T |
19892802 |
ttggcagtgttgaattttccggaggatgtagttaaagattcactcaaagaaatggctataaattctgagcctttagaagaaggtacttctcctgtgttgg |
19892703 |
T |
|
| Q |
325 |
caataaagagaaaa |
338 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
19892702 |
caatcaagagaaaa |
19892689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 384 - 503
Target Start/End: Complemental strand, 19892631 - 19892512
Alignment:
| Q |
384 |
aaaactgatcatcatagtgatcgaattcagagagaaaccaatactaaatctcaaaatgtgtttgtgtttgaggatttgggttcagaatatctggagtatt |
483 |
Q |
| |
|
|||| ||||||| || ||||||||| ||||||| ||||||||||||||| || |||||||||| ||||| ||||||||| | |||||||| ||| | |
|
|
| T |
19892631 |
aaaattgatcataatggtgatcgaacaaagagagagaccaatactaaatctaaacatgtgtttgtctttgaagatttgggtgctgaatatcttgagcaac |
19892532 |
T |
|
| Q |
484 |
tattgagcttgacatcttag |
503 |
Q |
| |
|
|||||||||| || |||||| |
|
|
| T |
19892531 |
tattgagcttaacttcttag |
19892512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 48 - 478
Target Start/End: Original strand, 38862371 - 38862801
Alignment:
| Q |
48 |
attaaagaaagtaataaaagggtgtttagaggtataagaacaaggccatgggggaaatttgcggcggagataagggactcaacaagaaaaggggctagag |
147 |
Q |
| |
|
||||| |||||||| ||||| | |||||||| ||||||| ||||||||||| |||||||| ||||||||||| || |||||||||||||| | ||||| |
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|
| T |
38862371 |
attaaggaaagtaagaaaagagcatttagaggagtaagaactaggccatggggaaaatttgccgcggagataagagattcaacaagaaaaggtgttagag |
38862470 |
T |
|
| Q |
148 |
tatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgcgtatttagcaagaggttcattggctgtgttgaattttccaga |
247 |
Q |
| |
|
| ||| ||||||||||| |||||||||||| ||||||||||||||| || ||||| || | || | |||||||||||||||| |||||||||||||| || |
|
|
| T |
38862471 |
tgtggattggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagctttttcaacaagaggttcattggcagtgttgaattttcctga |
38862570 |
T |
|
| Q |
248 |
agaagtagttaaagaatcactcaaagaaatgtctagaaattctaagcctttggaagaaggtacttcgcctgtgttggcaataaagagaaaacacgtaatg |
347 |
Q |
| |
|
||||||||| | ||||||||| ||||||||| |||| ||||||||||||||||| ||||| ||||| ||||| |||||| | || |||||||| ||| |
|
|
| T |
38862571 |
agaagtagtgagagaatcacttaaagaaatggctagtaattctaagcctttggatgaaggcacttcacctgtattggcactcaaaagaaaacatagcatg |
38862670 |
T |
|
| Q |
348 |
aggaaatcacccaataaggttagtnnnnnnnnnnttaaaactgatcatcatagtgatcgaattcagagagaaaccaatactaaatctcaaaatgtgtttg |
447 |
Q |
| |
|
|| ||| |||||||||| ||| | |||| ||| |||||||||||| |||||||| || ||||||| ||| ||||||||| |||||| |
|
|
| T |
38862671 |
agaaaaaagtccaataaggtaagtacaaagagaatcaaaagtgaatatcatagtgatcaaattcagattgagaccaatattaattctcaaaatttgtttg |
38862770 |
T |
|
| Q |
448 |
tgtttgaggatttgggttcagaatatctgga |
478 |
Q |
| |
|
| ||||||||||||||| | ||||||||||| |
|
|
| T |
38862771 |
tttttgaggatttgggtgctgaatatctgga |
38862801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 38830698 - 38830804
Alignment:
| Q |
96 |
tgggggaaatttgcggcggagataagggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagcttacg |
195 |
Q |
| |
|
||||| ||||| || || |||||||||||| |||||||||| || | | | || ||| |||||||||| | || || |||| ||||||||||||||| | |
|
|
| T |
38830698 |
tggggaaaattcgcagcagagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatg |
38830797 |
T |
|
| Q |
196 |
accaagc |
202 |
Q |
| |
|
||||||| |
|
|
| T |
38830798 |
accaagc |
38830804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 84 - 244
Target Start/End: Complemental strand, 30624012 - 30623852
Alignment:
| Q |
84 |
agaacaaggccatgggggaaatttgcggcggagataagggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctg |
183 |
Q |
| |
|
|||| ||| |||||||| ||||| || ||||| ||||| ||||||||||||||||| | |||||| ||| |||| ||||| | || || |||| |||| |
|
|
| T |
30624012 |
agaagaagaccatggggaaaattcgcagcggaaataagagactcaacaagaaaaggtgttagagtttggattggtacatttgatacagctgaagctgctg |
30623913 |
T |
|
| Q |
184 |
ctttagcttacgaccaagccgcgtatttagcaagaggttcattggctgtgttgaattttcc |
244 |
Q |
| |
|
|||||||||| || ||||| || | | | ||||||| ||| |||| |||||||||||||| |
|
|
| T |
30623912 |
ctttagcttatgatcaagcagctttatcaacaagaggatcaatggcagtgttgaattttcc |
30623852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 30629634 - 30629483
Alignment:
| Q |
93 |
ccatgggggaaatttgcggcggagataagggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagctt |
192 |
Q |
| |
|
|||||||| ||||| || ||||| ||||| |||||||| ||||| || | |||||| ||| |||| ||||| | || || |||| ||| |||||||||| |
|
|
| T |
30629634 |
ccatggggaaaattcgcagcggaaataagagactcaactagaaatggtgttagagtttggattggtacatttgatacagctgaagcagcagctttagctt |
30629535 |
T |
|
| Q |
193 |
acgaccaagccgcgtatttagcaagaggttcattggctgtgttgaattttcc |
244 |
Q |
| |
|
| || ||||| || | | | ||||||| ||| |||| |||||||||||||| |
|
|
| T |
30629534 |
atgatcaagcagctttatcaacaagaggatcaatggcagtgttgaattttcc |
30629483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 18652896 - 18652946
Alignment:
| Q |
74 |
tagaggtataagaacaaggccatgggggaaatttgcggcggagataaggga |
124 |
Q |
| |
|
||||||| |||| | ||||||||||||||||||||| || ||||||||||| |
|
|
| T |
18652896 |
tagaggtgtaaggagaaggccatgggggaaatttgcagctgagataaggga |
18652946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 4417906 - 4417950
Alignment:
| Q |
141 |
gctagagtatggcttggaacattcaacacggccgaagaagctgct |
185 |
Q |
| |
|
|||||||||||||||||||||||| | || || |||||||||||| |
|
|
| T |
4417906 |
gctagagtatggcttggaacattccaaacagctgaagaagctgct |
4417950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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