View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_30 (Length: 516)
Name: NF1304_low_30
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_30 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 516
Target Start/End: Original strand, 30504097 - 30504592
Alignment:
| Q |
30 |
ccaagtacctacatcacaatattaacaattcaaccnnnnnnntgtaacaacattaggtttcataaatcattttttctctcttgaatatggagaaatttta |
129 |
Q |
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| T |
30504097 |
ccaagtacctacatcacaatattaacaattcaaccaaaaaaatgtgacaagattaggtttcataaatcattttttctctcttgaatatggagaaatttta |
30504196 |
T |
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| Q |
130 |
ctaacaaaaattgaaccctagatcgatctttcgtat-----taccctaataattagttagnnnnnnnnnnnt--gaaattgtacacttatttccttatca |
222 |
Q |
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| T |
30504197 |
ctagcaaaaattgaaccctagatcgatctttcgtatagacataccctaataattagttagaaaaaaaaagagaggaaattctacacttatttccttatca |
30504296 |
T |
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| Q |
223 |
aagaacaagagatgttccaggtttcaggattcaatctctacttctaaatatttctcttccaccaaaacttgtttataaaaaataaagactgaattagaaa |
322 |
Q |
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| T |
30504297 |
aagaacaagagatgttccaggtttcaggattcaatctctacttctaaatatttctcttccaccaaaacttgttaataaaaaataaagattgaattagaga |
30504396 |
T |
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| Q |
323 |
ctca-ttcata-nnnnnnngttggcgtgtaccggagaaattcaagagcatgagccccgctacatatgaagagagaaagaggaggacggtaattctggaga |
420 |
Q |
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| T |
30504397 |
ctcatttcatattttttttgttggtatgtaccggagaaattcaagcacatgagcaccgctacatctggagagggagagaggaggacggtgattcttgagg |
30504496 |
T |
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| Q |
421 |
tattggccaaaagtgttccagaaacggcgttgctggtgttcatagcggctgcttgtggtggtagagccagaaggtgaagagctaccaactatggcg |
516 |
Q |
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| T |
30504497 |
tactggccaaaagtgttccagtcacggcgtttctggttttcatagcggctgcttgtggtggtagagccagaaggtgaagagctaccaactatggcg |
30504592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 349 - 485
Target Start/End: Complemental strand, 51438998 - 51438862
Alignment:
| Q |
349 |
taccggagaaattcaagagcatgagccccgctacatatgaagagagaaagaggaggacggtaattctggagatattggccaaaagtgttccagaaacggc |
448 |
Q |
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| T |
51438998 |
taccggagaaattcaagaacatgtgcaccggtacataaggagagggagagaggaggacggtgattcttgaggtactggacaaaggtgttccagtcacggc |
51438899 |
T |
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| Q |
449 |
gttgctggtgttcatagcggctgcttgtggtggtaga |
485 |
Q |
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| T |
51438898 |
gtttctggttttcatagcggctgcttttggtggtaga |
51438862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 473
Target Start/End: Complemental strand, 38980223 - 38980105
Alignment:
| Q |
355 |
agaaattcaagagcatgagccccgctacatatgaagagagaaagaggaggacggtaattctggagatattggccaaaagtgttccagaaacggcgttgct |
454 |
Q |
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| T |
38980223 |
agaaattcaaggacatgtgcaccgctgcacctggagagggaaagaggtggacgatgattcttgaggtactgaccaaaggtgttccagtcacggcgtttct |
38980124 |
T |
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| Q |
455 |
ggtgttcatagcggctgct |
473 |
Q |
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| T |
38980123 |
ggttctcatagcggctgct |
38980105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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