View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_31 (Length: 512)
Name: NF1304_low_31
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 62 - 502
Target Start/End: Complemental strand, 13750106 - 13749665
Alignment:
| Q |
62 |
ttagtttcttcatattcccagccaaatcccaacaaaaatcaacaacttcatttatttccaaaacgcacagcatcacggtatatgatttacatctcaacct |
161 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13750106 |
ttagtttcttcatattcccagccaaatcccaaaaaaattcaacaacttcatttatttccaaaacgcacagcatcacggtatatgatttacagctcaacct |
13750007 |
T |
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| Q |
162 |
cttgggatgattttcagaaacacatcaaaagaatcgtgatttctcaaacccagacacctagattcaaacctagaataaccaaagcattaaaactaaatcc |
261 |
Q |
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| T |
13750006 |
tttgggatgattttcagaaacacatcaaaagaatcgtgatttctcaaacccagacacctagattcaaacctagaataaccaaagcattaaaactaaatcc |
13749907 |
T |
|
| Q |
262 |
aaattggaatgaatctgnnnnnnn-cggaaggaatcccaacagaaattggattagatctcaagggatccaagaatgaagaagacgaaggtgaagaaaatt |
360 |
Q |
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| T |
13749906 |
aaattggaatgaatttgaaaaaaaacggaaggaatcccaacagaaattggattagatctgaagggatccaagaatgaagaagacgaaggtgaagaaaatt |
13749807 |
T |
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| Q |
361 |
cagagtttagatttcttaattaaattgaaaatatgggtttcatttttaggaatttgtttataagaaagaaagaataaatagtgaagaagaaatcagaaga |
460 |
Q |
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| T |
13749806 |
cagagtttagatttcttaattaaattgaaaatatgggtttcatttttaggaatttgtttataagaaagaaagaataaacagtgaagatgaaatcagaaga |
13749707 |
T |
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| Q |
461 |
tcatgcataggtgagaggtgataatgttgttcgatgcctttg |
502 |
Q |
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| T |
13749706 |
tcatgtataggtgagaggtgataatgttgttcgatgcctttg |
13749665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 66 - 448
Target Start/End: Complemental strand, 56234626 - 56234239
Alignment:
| Q |
66 |
tttcttcatattcccagccaaatcccaacaaaaatcaacaacttcatttatttccaaaacgcacagcatcacggtatatgatttacatctcaacctcttg |
165 |
Q |
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||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| ||| |
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| T |
56234626 |
tttcttcatattctcagccaaatcccaaaaaaattcaacaacttcatttatttccaaaatgcacaacatcacggtatatgatttacaactcaaccttttg |
56234527 |
T |
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| Q |
166 |
ggatgattttcagaaacaca----tcaaaagaatcgtgatttctcaaacccagacacctagattcaaacctagaataaccaaagcattaaaactaaatcc |
261 |
Q |
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| T |
56234526 |
ggatgattttccgaaacccacccatcaaaagaatcgtgatttctcaaacccagacacctagattcaaacctagaaaaaccaaagcaataaaactaaatcc |
56234427 |
T |
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| Q |
262 |
aaattggaatgaatct-gnnnnnnncggaaggaatcccaacagaaattggattagatctcaagggatccaagaatgaagaagacgaaggtgaagaaaatt |
360 |
Q |
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| T |
56234426 |
aaattggaatgaatctcgaaaaaaactgaaggaatcccaacagaaaatggttccgatctgaagggatccaagaatgaagaagacgaaggtgaagaaaatt |
56234327 |
T |
|
| Q |
361 |
cagagtttagatttcttaattaaattgaaaatatgggtttcatttttaggaatttgtttataagaaagaaagaataaatagtgaagaa |
448 |
Q |
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| T |
56234326 |
cagagttttgatttcttaattaaattgataacatgggtttcatttttaggaatttgtttataagaaagaaagaataaacactgaagaa |
56234239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 117 - 439
Target Start/End: Original strand, 34014826 - 34015148
Alignment:
| Q |
117 |
ttccaaaacgcacagcatcacggtatatgatttacatctcaacctcttgggatgattttcagaaacacatcaaaagaatcgtgatttctcaaacccagac |
216 |
Q |
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|||||||||||||| |||| | ||||| | ||| | |||||| | ||||||||||||| | || |||||||||||||||||||||||||| || || |
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| T |
34014826 |
ttccaaaacgcacaacatcgcaatatataacttagagctcaactt-ttgggatgatttttcaatacccatcaaaagaatcgtgatttctcaaaaccggat |
34014924 |
T |
|
| Q |
217 |
acctagattcaaacctagaataaccaaagcattaaaactaaatccaaattggaatgaatctgnnnnnnncggaag--gaatcccaacagaaattggatta |
314 |
Q |
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| T |
34014925 |
acctaaattcaaacccagaa-aaccaaaataagaaatctaaatccaaattggaatgaatctgaaaaggaaaaaaaatgaatcgcaacagaaaatggattt |
34015023 |
T |
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| Q |
315 |
gatctcaagggatccaagaatgaagaagacgaaggtgaagaaaattcagagtttagatttcttaattaaattgaaaatatgggtttcatttttaggaatt |
414 |
Q |
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||| | |||||||||| |||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
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| T |
34015024 |
gatatgaagggatccaggaatgaagaagacgaaggtgaacaaaacttagagtttagatttcttaattaaattgaaaatatgggtttgattttcaagaatt |
34015123 |
T |
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| Q |
415 |
tgtttataagaaagaaagaataaat |
439 |
Q |
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| T |
34015124 |
tgtttataagaaagaaggaagaaat |
34015148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 385 - 461
Target Start/End: Complemental strand, 46693357 - 46693281
Alignment:
| Q |
385 |
ttgaaaatatgggtttcatttttaggaatttgtttataagaaagaaagaataaatagtgaagaagaaatcagaagat |
461 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||| ||||||| || | |||||||||||| ||||||| |
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| T |
46693357 |
ttgaaaatatgggtttgattttaaggaatttgtttataagaaataaagaattaacattgaagaagaaattagaagat |
46693281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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