View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_35 (Length: 500)
Name: NF1304_low_35
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 120 - 487
Target Start/End: Original strand, 43851131 - 43851501
Alignment:
| Q |
120 |
cagacacagaaccagattacaagcatcaatagtataactaacactaccaaagactaaactttagcaagcatacatttataaacagaaatgcataa---tg |
216 |
Q |
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| T |
43851131 |
cagacacagaaccagattacaagcatcaatagtataactaacactaccaaagactaaactttagcaagcatacatttataaacagaaatgcataataatg |
43851230 |
T |
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| Q |
217 |
cttcataattaataatttcaacggcaaaacagaaatacttcaactaaagacaaatgccacatggcagctttttattggattgttttatagtgaatgaatt |
316 |
Q |
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| T |
43851231 |
cttcataattaataatttcaacggcaaaacagaaatacttcaactaaagacaaatgccacatggcagctttttattggattgttttatagtgaatgaatt |
43851330 |
T |
|
| Q |
317 |
tccctttctactaagtttgaattcatagtatatagtatatataatatgtgacacaaattgccggcttgaatacgttgtttgtgtcaacactaggacggac |
416 |
Q |
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| T |
43851331 |
tccctttctactaagtttgaattcatagtatatagtatatataatatgtgacacaaattgccggcttgaatacgttgtttgtgtcaacactaggacggac |
43851430 |
T |
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| Q |
417 |
ttttcttgggagtcactgtccatctcccatatcaaatcatttattaacatttcattatatatttctcctct |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43851431 |
ttttcttgggagtcactgtccatctcccatatcaaatcatttatcaacatttcattatatatttctcctct |
43851501 |
T |
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