View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_37 (Length: 493)
Name: NF1304_low_37
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 2297536 - 2297925
Alignment:
| Q |
8 |
cgaagaatatgctgtggctgtcataataattttgtctttgtgtatgcattcattgattcaaacttctaatcacacctttctatttgtggcttttattatt |
107 |
Q |
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| T |
2297536 |
cgaagcatatgctgtggctgtcataacaattttgtctttgtgtatgcattcattgattcaaacttctaatcacacctttctatttgtggcttttattatt |
2297635 |
T |
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| Q |
108 |
ttgttggaaaaatcaaatttgtattcctccttagttttttattgtgtccaactcaactcaaaaaattgacaaatctaatatgaatattccatgtaagtat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2297636 |
ttgttggaaaaatcaaatttgtattcctccttagttttttattgtgtccaactcaactcaaaaaattgacaaatctaatatgaatattccatgtaagtat |
2297735 |
T |
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| Q |
208 |
tgctcaagaaatatattctcaaaaataagaaaaacatactcaaagataagaagaaagacacaatgcgatttttacttagtttttgcaaatccacatagaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2297736 |
tgctcaagaaatatattctcaaaaataagaaaaacatactcaaagataagaagaaagacacaatgcgatttttacttagtttttgcaaatccacatagaa |
2297835 |
T |
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| Q |
308 |
taaaatgtacataaaatgnnnnnnnnnnnnnngcaatttaaaagatgacagcctataacaagtcatataaagaggaccattgatggacat |
397 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2297836 |
taaaatgtacataaaatgttttttatttttttgcaatttaaaagatgacagcctataacaagtcatataaagaggaccattgatggacat |
2297925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 387
Target Start/End: Original strand, 2319201 - 2319249
Alignment:
| Q |
340 |
gcaatttaaaagatgacagcctataac-aagtcatataaagaggaccat |
387 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2319201 |
gcaatttaaaagatgacagcctataacaaagtcatataaagaggaccat |
2319249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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