View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_39 (Length: 491)
Name: NF1304_low_39
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_39 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 7 - 491
Target Start/End: Original strand, 48475412 - 48475894
Alignment:
| Q |
7 |
tccaacaaaatggtacgattctcaacaaaaatcacacaacatcaaactcaataaagcttcaattttgattgtttaaataaaaagtattagctattttgat |
106 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48475412 |
tccaacaaaatggtacgattctcaaccaaaatcacacaacatcaaactcaataaagcttcaattttgattgtttgaataaaaagtattagctattttgat |
48475511 |
T |
|
| Q |
107 |
tgttaatatgacaatttattctgtttgtatatatttacggtgtgagcaagacatgttcaaaagagtggtattttagataatttagctcccttcaatccaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48475512 |
tgttaatatgacaatttattctgtttgtatatatttacggtgtgagcaagacatgttcaaaagagtggtattttagataatttagctcccttcaatccaa |
48475611 |
T |
|
| Q |
207 |
atcaagaatataccaatacaacaaatcaggtgcaaacaagcaaacttatgctgcatttttattggctctttattttgaggtaatatggtaaagttttgct |
306 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48475612 |
atcaagaatataccaatgcaacaaatcaggtgcaaacaagcaaacttgtgctgcatttttattggctctttattttgaggtaatatggtaaagttttgct |
48475711 |
T |
|
| Q |
307 |
attaaaataccaattcacttcattcatgtctttttgttttggagggccaacagcatatgaatgctcaacaatattcatatagacaaggatcaactaggac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48475712 |
attaaaataccaattcacttcattcatgtctttttgttttggagggccaaca--atatgaatgctcaacaatattcatatagacaaggatcaactagaac |
48475809 |
T |
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| Q |
407 |
ttcaaggttaaagttatttgccacttgttgaaagaaagaagatgtctgctatttcattttaaatatctagctttattttgtgtta |
491 |
Q |
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| T |
48475810 |
ttcaaggttaaagttattagccacttgttgaaagaaagaagatgtctgctatttcattttaaatatttagctttattttgtgtta |
48475894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 459
Target Start/End: Original strand, 17304338 - 17304479
Alignment:
| Q |
316 |
ccaattcacttcatt-catgtctttttgttttggagggccaacagcatatgaatgctcaacaata-ttcatatagacaaggatcaactaggacttcaagg |
413 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||||| | | |||||||||| |||| ||| |||||| || || |||||| | ||||||||| | |
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| T |
17304338 |
ccaattcacttcatttcatgtctttttgttttgcagggcccataccatatgaatgatcaaacataattcataaagtcagagatcaatttggacttcaaag |
17304437 |
T |
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| Q |
414 |
ttaaagttatttgccacttgttgaaagaaagaagatgtctgctatt |
459 |
Q |
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|| |||||||| | ||||||||| |||| ||||||||||||| |
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| T |
17304438 |
ttgaagttattaactacttgttgagagaa----gatgtctgctatt |
17304479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 459
Target Start/End: Original strand, 34588035 - 34588176
Alignment:
| Q |
316 |
ccaattcacttca-ttcatgtctttttgttttggagggccaacagcatatgaatgctcaacaata-ttcatatagacaaggatcaactaggacttcaagg |
413 |
Q |
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||||||||||||| ||||||||||||||||||| |||||| | | |||||||||| |||| ||| |||||| || || |||||| | ||||||||| | |
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| T |
34588035 |
ccaattcacttcaattcatgtctttttgttttgcagggcccataccatatgaatgatcaaacataattcataaagtcagagatcaatttggacttcaaag |
34588134 |
T |
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| Q |
414 |
ttaaagttatttgccacttgttgaaagaaagaagatgtctgctatt |
459 |
Q |
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|| |||||||| | ||||||||| |||| ||||||||||||| |
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| T |
34588135 |
ttgaagttattaactacttgttgagagaa----gatgtctgctatt |
34588176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 14123976 - 14124008
Alignment:
| Q |
185 |
aatttagctcccttcaatccaaatcaagaatat |
217 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
14123976 |
aatttagctcccttcaatccaaatcaaaaatat |
14124008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 24345167 - 24345195
Alignment:
| Q |
189 |
tagctcccttcaatccaaatcaagaatat |
217 |
Q |
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| T |
24345167 |
tagctcccttcaatccaaatcaagaatat |
24345195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 442
Target Start/End: Complemental strand, 27857424 - 27857296
Alignment:
| Q |
316 |
ccaattcacttca-ttcatgtctttttgttttggagggccaacagcatatgaatgctc-aacaatattcatatagacaaggatcaactaggacttcaagg |
413 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |||||||| | |||||||||| || |||| ||||||| || || |||||| | ||||||||| | |
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| T |
27857424 |
ccaattcacttcaattcatgtctttttgttttgcagggccaataccatatgaatgatcaaacataattcataaagtcagagatcaatttggacttcaaag |
27857325 |
T |
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| Q |
414 |
ttaaagttatttgccacttgttgaaagaa |
442 |
Q |
| |
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|| |||||||| || ||||||||| |||| |
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| T |
27857324 |
ttgaagttattagctacttgttgagagaa |
27857296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 35051016 - 35051048
Alignment:
| Q |
185 |
aatttagctcccttcaatccaaatcaagaatat |
217 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
35051016 |
aatttagctcccttcaatccaaatcaaaaatat |
35051048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 442
Target Start/End: Complemental strand, 5932078 - 5931951
Alignment:
| Q |
317 |
caattcacttca-ttcatgtctttttgttttggagggccaacagcatatgaatgctc-aacaatattcatatagacaaggatcaactaggacttcaaggt |
414 |
Q |
| |
|
|||||||||||| |||||||||||||||| || |||| ||| | |||||||||| || |||| ||||||| || || |||||| | ||||||||| || |
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| T |
5932078 |
caattcacttcaattcatgtctttttgttatgcagggtcaataccatatgaatgatcaaacataattcataaagtcagagatcaatttggacttcaaagt |
5931979 |
T |
|
| Q |
415 |
taaagttatttgccacttgttgaaagaa |
442 |
Q |
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| |||||||| || ||||||||| |||| |
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| T |
5931978 |
tgaagttattagctacttgttgagagaa |
5931951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 442
Target Start/End: Complemental strand, 13858091 - 13857963
Alignment:
| Q |
316 |
ccaattcacttca-ttcatgtctttttgttttggagggccaacagcatatgaatgctc-aacaatattcatatagacaaggatcaactaggacttcaagg |
413 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||| | | |||||||||| || |||| ||||||| || || |||||| | | ||||||| | |
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| T |
13858091 |
ccaattcacttcaattcatgtctttttgttttgcagggcccataccatatgaatgatcaaacataattcataaagtcagagatcaatttgaacttcaaag |
13857992 |
T |
|
| Q |
414 |
ttaaagttatttgccacttgttgaaagaa |
442 |
Q |
| |
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|| |||||||| | ||||||||| |||| |
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| T |
13857991 |
ttgaagttattaactacttgttgagagaa |
13857963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 368
Target Start/End: Complemental strand, 47997546 - 47997485
Alignment:
| Q |
308 |
ttaaaataccaattcacttca-ttcatgtctttttgttttggagggccaacagcatatgaat |
368 |
Q |
| |
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||||||||| ||||||||||| || |||||||||||||||| |||||||| | ||||||||| |
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| T |
47997546 |
ttaaaatactaattcacttcaatttatgtctttttgttttgtagggccaataccatatgaat |
47997485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 20006390 - 20006358
Alignment:
| Q |
185 |
aatttagctcccttcaatccaaatcaagaatat |
217 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
20006390 |
aatttagctcccttcaatccaaatcaaaaatat |
20006358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 8532316 - 8532287
Alignment:
| Q |
185 |
aatttagctcccttcaatccaaatcaagaa |
214 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
8532316 |
aatttagctcccttcaatccaaatcaagaa |
8532287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 434
Target Start/End: Original strand, 29091977 - 29092097
Alignment:
| Q |
316 |
ccaattcacttca-ttcatgtctttttgttttggagggccaacagcatatgaatgctc-aacaatattcatatagacaaggatcaactaggacttcaagg |
413 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| ||||| || | |||||||||| || |||| ||||||| || || |||||| | ||| ||||| | |
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| T |
29091977 |
ccaattcacttcaattcatatctttttgttttgcagggctaataccatatgaatgatcaaacataattcataaagccagagatcaatttggatttcaaag |
29092076 |
T |
|
| Q |
414 |
ttaaagttatttgccacttgt |
434 |
Q |
| |
|
|| |||||||| || |||||| |
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| T |
29092077 |
ttgaagttattagctacttgt |
29092097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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