View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_40 (Length: 491)
Name: NF1304_low_40
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_40 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 99 - 491
Target Start/End: Original strand, 23851772 - 23852164
Alignment:
| Q |
99 |
tttggaatagttccattcaagtgattgttagcaaggattaaatatttcaagtttgacaattttcccaaaaaatttggaataggaccatggaaaaaacttg |
198 |
Q |
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| T |
23851772 |
tttggaatagttccattcaagtgattgttagcaaggattaaatatttcaagtttgacaattttcccaaaaaatttggaataggcccatggaaaaaacttg |
23851871 |
T |
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| Q |
199 |
aatgaattttaaggattaccagattttcaagctgccccaaccatgttggcagctgatcattgaatttgttgttggtcaaatccagttccagcaaatcaaa |
298 |
Q |
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| T |
23851872 |
aatgaattttaaggattaccagattttcaagctgccccaaccatgttggcagctgatcattgaatttgttgttggtcaaatccagttccagcaaatcaaa |
23851971 |
T |
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| Q |
299 |
tccattgcatctcgtagaatttaagttgccaacaagtgcgtctccttgaagtccgtttccggacaaatctattgacagaagatgacacatatttcctaaa |
398 |
Q |
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| T |
23851972 |
tccattgcatctcgtagaatttaagttgccaacaagtgcgtctccttgaagtccgtttccagacaaatctattgacagaagatgacacatatttcctaaa |
23852071 |
T |
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| Q |
399 |
acaattggtaaagaaccctcaatatggtttacatgattccatgacagattgagatacaaaaggctctttaaccctcctaaccactgtggaaca |
491 |
Q |
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| T |
23852072 |
acaattggtaaagaaccctcaatatggtttacatgattccatgacagattgagatacaaaaggctctttaaccctcctaaccactgtggaaca |
23852164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 99 - 491
Target Start/End: Original strand, 22618464 - 22618856
Alignment:
| Q |
99 |
tttggaatagttccattcaagtgattgttagcaaggattaaatatttcaagtttgacaattttcccaaaaaatttggaataggaccatggaaaaaacttg |
198 |
Q |
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| T |
22618464 |
tttggaatagttccattcaagtaattgttaccaagggttaaatatttcaaatttgacaattttcccaaaatatttggaataggaccatggaaaaaacttg |
22618563 |
T |
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| Q |
199 |
aatgaattttaaggattaccagattttcaagctgccccaaccatgttggcagctgatcattgaatttgttgttggtcaaatccagttccagcaaatcaaa |
298 |
Q |
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| T |
22618564 |
attgaagtgtgaggtttaccatattttcaagttgccccaaccatgtcggcagttgattattgaaattgttgttggtcatgtcaagttcctctaaaccaga |
22618663 |
T |
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| Q |
299 |
tccattgcatctcgtagaatttaagttgccaacaagtgcgtctccttgaagtccgtttccggacaaatctattgacagaagatgacacatatttcctaaa |
398 |
Q |
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| T |
22618664 |
tccatttcatcttgcagattgtaaattaccgatgagtgcatctccttgaagtcggtttccagacaaatctagtgacagaagctgacacatatttcctagc |
22618763 |
T |
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| Q |
399 |
acaattggtaaagaaccctcaatatggtttacatgattccatgacagattgagatacaaaaggctctttaaccctcctaaccactgtggaaca |
491 |
Q |
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| T |
22618764 |
attgttggtattgaaccctcaatatggttcacatgattccatgaaatattgaggtacaaaagactctctaacccatctaaccattttggaaca |
22618856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 99 - 491
Target Start/End: Original strand, 23751071 - 23751463
Alignment:
| Q |
99 |
tttggaatagttccattcaagtgattgttagcaaggattaaatatttcaagtttgacaattttcccaaaaaatttggaataggaccatggaaaaaacttg |
198 |
Q |
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| T |
23751071 |
tttggaatagttccattcaagtaattgttaccaagggttaaatatttcaaatttgacaattttcccaaaatatttggaataggaccatggaaaaaacttg |
23751170 |
T |
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| Q |
199 |
aatgaattttaaggattaccagattttcaagctgccccaaccatgttggcagctgatcattgaatttgttgttggtcaaatccagttccagcaaatcaaa |
298 |
Q |
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| T |
23751171 |
attgaagtgtgaggtttaccatattttcaagttgccccaaccatgtcggcagttgattattgaaattgttgttggtcatgtcaagttcctctaaaccaga |
23751270 |
T |
|
| Q |
299 |
tccattgcatctcgtagaatttaagttgccaacaagtgcgtctccttgaagtccgtttccggacaaatctattgacagaagatgacacatatttcctaaa |
398 |
Q |
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|||||| ||||| | ||| | ||| || || | ||||| ||||||||||||| |||||| |||||||||| ||||||||| |||||||||||||||| |
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| T |
23751271 |
tccatttcatcttgcagattgtaaattaccgatgagtgcatctccttgaagtcggtttccagacaaatctagtgacagaagctgacacatatttcctagc |
23751370 |
T |
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| Q |
399 |
acaattggtaaagaaccctcaatatggtttacatgattccatgacagattgagatacaaaaggctctttaaccctcctaaccactgtggaaca |
491 |
Q |
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| T |
23751371 |
attgctggtatagaaccctcaatatggttcacatgattccatgaaatattgaggtacaaaagactctctaacccatctaaccattttggaaca |
23751463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 333 - 481
Target Start/End: Complemental strand, 20573474 - 20573326
Alignment:
| Q |
333 |
agtgcgtctccttgaagtccgtttccggacaaatctattgacagaagatgacacatatttcctaaaacaattggtaaagaaccctcaatatggtttacat |
432 |
Q |
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||||| ||||||| ||||| |||||| |||||||||| ||||||||| |||||||||||||||| | |||||| |||||||||||||||||| |||| |
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| T |
20573474 |
agtgcatctccttcaagtctgtttccagacaaatctagtgacagaagctgacacatatttcctagcattgttggtatagaaccctcaatatggttcacat |
20573375 |
T |
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| Q |
433 |
gattccatgacagattgagatacaaaaggctctttaaccctcctaacca |
481 |
Q |
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| T |
20573374 |
gattccatgaaatattgaggtacaaaatactctttaacccacctaacca |
20573326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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