View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_41 (Length: 491)
Name: NF1304_low_41
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 1084204 - 1083768
Alignment:
| Q |
1 |
aaatattccaacaatttgtaggaatcaataccgtaatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccacaatgcttct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1084204 |
aaatattccaacaatttgtaggaatcaatatcgtaatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccgcaatgcttct |
1084105 |
T |
|
| Q |
101 |
gtctcttatcactgctgggttgaatgcgtttggttcgcttataagcatatatttcatcgataaaaccgggagaaagaagctagctttgattagtttgttt |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1084104 |
gtctcttatcactgctgggttgaatacgtttggttcgcttataagcatatatttcattgataaaaccgggagaaagaagctagctttgattagtttgttt |
1084005 |
T |
|
| Q |
201 |
ggagttgtcttatcacttgtgcttcttactgtcactttccgacaaaccgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1084004 |
ggagttgtcttatcacttgtgcttcttactgtcactttccgacaaaccgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaaca |
1083905 |
T |
|
| Q |
301 |
cctgtcctgcttttactccttctcgtggcggatgggactgcacaacgtgtttaaaggcttcaccaaaatgtggattttgtgcatctgactctaacaaggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1083904 |
cctgtcctgcttttactccttctcgtggcggatgggactgcacaacgtgtttaaaggcttcaccaaaatgtggattttgtgcatctgactctaacaaggt |
1083805 |
T |
|
| Q |
401 |
aaatatgcaatcttcctctttccataggccattttta |
437 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
1083804 |
aaatatgcaatcttcctctttccataggccattttta |
1083768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 33116208 - 33116552
Alignment:
| Q |
1 |
aaatattccaacaatttgtaggaatcaataccgtaatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccacaatgcttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33116208 |
aaatattccaacaatttgtaggaatcaataccgtaatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccgcaatgcttct |
33116307 |
T |
|
| Q |
101 |
gtctcttatcactgctgggttgaatgcgtttggttcgcttataagcatatatttcatcgataaaaccgggagaaagaagctagctttgattagtttgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116308 |
gtctcttatcactgctgggttgaatgcgtttggttctcttataagcatatatttcatcgataaaaccgggagaaagaagctagctttgattagtttgttt |
33116407 |
T |
|
| Q |
201 |
ggagttgtcttatcacttgtgcttcttactgtcactttccgacaaaccgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33116408 |
ggagttgtcttatcacttgtgcttcttactgtcactttctgacaaaccgaaactcattctccaatgataagtgaaatagaaacttatcatttcaacaaca |
33116507 |
T |
|
| Q |
301 |
cctgtcctgcttttactccttctcgtggcggatgggactgcacaa |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33116508 |
cctgtcctgcttttactccttctcgtggcggatgggactgcacaa |
33116552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 394 - 482
Target Start/End: Original strand, 33116549 - 33116637
Alignment:
| Q |
394 |
acaaggtaaatatgcaatcttcctctttccataggccatttttaactcatttccataaactttgcatgatagctaatcaagagtattat |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33116549 |
acaaggtaaatatgcaatcttcctctttccataggccatttttaactcatttccataaaatttgcatgatagctaatcaagagtattat |
33116637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 21559327 - 21559150
Alignment:
| Q |
1 |
aaatattccaacaatttgtaggaatcaataccgtaatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccacaatgcttct |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||| || |||||||||| ||| ||||| || ||||||||||||||||||||||| || |||| || | ||||| |
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| T |
21559327 |
aaatcttccaacaatttgtcggaatcaacacagtaatgtactacagtccaaccatcgttcaactagctggttttgcatcaaacaaaacagcacttcttct |
21559228 |
T |
|
| Q |
101 |
gtctcttatcactgctgggttgaatgcgtttggttcgcttataagcatatatttcatcgataaaaccgggagaaagaa |
178 |
Q |
| |
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||| || |||| ||||| | ||||| ||||||||| || | |||||||| || ||||| || ||||| || ||||| |
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| T |
21559227 |
gtcgctcgtcacagctggaattaatgcatttggttcgattttgagcatatactttatcgacaagaccggaaggaagaa |
21559150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 21492547 - 21492446
Alignment:
| Q |
96 |
cttctgtctcttatcactgctgggttgaatgcgtttggttcgcttataagcatatatttcatcgataaaaccgggagaaagaagctagctttgattagtt |
195 |
Q |
| |
|
||||||||||| |||||| |||| | ||||| || ||||| || | ||||||||||||||||| ||||| ||||| ||||| || || |||||||||| |
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| T |
21492547 |
cttctgtctctaatcacttctggcctcaatgcattcggttcaattctgagcatatatttcatcgacaaaactgggaggaagaaacttgcattgattagtt |
21492448 |
T |
|
| Q |
196 |
tg |
197 |
Q |
| |
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|| |
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|
| T |
21492447 |
tg |
21492446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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