View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_42 (Length: 487)
Name: NF1304_low_42
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 153 - 475
Target Start/End: Complemental strand, 8707566 - 8707245
Alignment:
| Q |
153 |
taatatggtgacaacaatcttcaaagaaaaatttagtcacattctctatgcagagtctcaatattacaataagctattaaactaattttctgatcttaca |
252 |
Q |
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| T |
8707566 |
taatatggcgacaacaatcttcgaagaaaaatttagtcacattctctatgcagagtctcgatattacaataagctattaaactgattttctgatcttaca |
8707467 |
T |
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| Q |
253 |
ataagcaattccttatcagaagttcacaatagactgcattaagcatgtaactatcgttggcatgttcaaaaactaaaattgaggaataa--aaa--atca |
348 |
Q |
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| T |
8707466 |
gtaagcaatttcttatcagaagttcacaatacaccttattaagcatgtaactatcgttggtatgttctaaaactaaaattgaggaataaggaaattatca |
8707367 |
T |
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| Q |
349 |
ttaattaaagtggttctaatgaccattttacaactgttcctacaggaatttgaactattgtctcttgaggttataaaatcaaactgttaccactaagcta |
448 |
Q |
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| T |
8707366 |
ttaattaaagtggttctaacgaccattttacaactgttcctacaggaatttgaactattgtct-----ggttataaaatcaaactgttaccactaagcta |
8707272 |
T |
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| Q |
449 |
acacttcatggactaatatgttagaat |
475 |
Q |
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| T |
8707271 |
acacttcatggtctaatatgttagaat |
8707245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 8699359 - 8699280
Alignment:
| Q |
77 |
atcacaactgtctttacagaaaactatagtgat---atagaaggacaaatttggctactacattgtatcttttataagct |
153 |
Q |
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| T |
8699359 |
atcacaattgtctttacagaaaactaaagtggtgagatggaaggacaaatttggctactactttgtatcttttataagct |
8699280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 8707623 - 8707569
Alignment:
| Q |
28 |
taagaccctaaattgatcgtcaaattaatccctcaaacatttaaatgtcatcaca |
82 |
Q |
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| T |
8707623 |
taagaccctaaattgatcgccaaattaatcaaacaaacatttaaatgtcatcaca |
8707569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 14383332 - 14383364
Alignment:
| Q |
348 |
attaattaaagtggttctaatgaccattttaca |
380 |
Q |
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| T |
14383332 |
attaattaaggtggttctaatgaccattttaca |
14383364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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