View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1304_low_43 (Length: 479)
Name: NF1304_low_43
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_43 |
 | |
|
| [»] scaffold0864 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 30 - 466
Target Start/End: Original strand, 5443983 - 5444419
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5443983 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
5444082 |
T |
|
| Q |
130 |
catcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaa |
229 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5444083 |
catcatcattatcacgagcaattgaacaatctcaaatttctataattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaa |
5444182 |
T |
|
| Q |
230 |
aataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaata |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5444183 |
aataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaata |
5444282 |
T |
|
| Q |
330 |
gcttttcaacgtcttttgaataaagttccaaacaaggagaaattggtgctaagttggaaaaaggctcttcgtgaggcagcaaacatcgcagggtttccaa |
429 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5444283 |
gcttttcaacgtcttttgaagaaagttccaaaaaaggagaaattggtgctaagttggaaaaaggctcttcgtgaggcagcaaacatcgcagggtttccaa |
5444382 |
T |
|
| Q |
430 |
tagtgaagtccgggtaatttcattcaacaactacttc |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5444383 |
tagtgaagtccgggtaatttcattcaacaactacttc |
5444419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 30 - 406
Target Start/End: Complemental strand, 5185081 - 5184705
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||| | ||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||| || | || | |
|
|
| T |
5185081 |
actcgttcttcctttacttcacatctctattccgctcttcaaaaggacggaattaagatttttttagatgataatgagcttcaaagaggagattatatat |
5184982 |
T |
|
| Q |
130 |
catcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaa |
229 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||||||| ||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||| || |
|
|
| T |
5184981 |
caacatcattatcacgctcaattgaacagtctcaagtttctataattgttttttccaaaaattatgccaattcgagatggtgtttggatgaattggaaaa |
5184882 |
T |
|
| Q |
230 |
aataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaata |
329 |
Q |
| |
|
|||||||| ||||| | || |||||||||||| ||||| ||||||||||||| |||||| ||||||||||| ||| ||| || ||| ||||||||||| |
|
|
| T |
5184881 |
gataatgaagtgtcgcagaaccataggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaata |
5184782 |
T |
|
| Q |
330 |
gcttttcaacgtcttttgaataaagttccaaacaaggagaaattggtgctaagttggaaaaaggctcttcgtgaggc |
406 |
Q |
| |
|
||||||||| |||||||||| ||| || |||| ||||| ||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
5184781 |
gcttttcaaagtcttttgaacaaaattttaaacgaggaggaattggtgctacgttggagagaggctcttcgtgaggc |
5184705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 30 - 410
Target Start/End: Original strand, 5394223 - 5394603
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||| |||||| |||| ||||||||||||||||| ||| ||||||||||||||||||||| || ||||| |
|
|
| T |
5394223 |
actcgttcttcattcacttcacatctctatgcggctcttaaaaattttggaattaaggtttttagagatgataatgagcttcaaagaggagattgcattt |
5394322 |
T |
|
| Q |
130 |
catcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaa |
229 |
Q |
| |
|
|| |||||||||||| |||||||| ||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
5394323 |
caacatcattatcacacgcaattgaacagtctcgaatttctataattgttttctcaaagaattatgctgattcgcgatggtgtctgaatgaattggaaaa |
5394422 |
T |
|
| Q |
230 |
aataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaata |
329 |
Q |
| |
|
||||||||| |||| | || ||| || ||||||||||| ||||||||||||| ||||||||||||||||||||| |||| || ||| ||||||||| |
|
|
| T |
5394423 |
aataatgaagtgtcaaagaaccattgggcaagtggttgttccagtgttctaccatgtagatccctctgaagtgcgcaatcagaaaggtgagtttggaagg |
5394522 |
T |
|
| Q |
330 |
gcttttcaacgtcttttgaataaagttccaaacaaggagaaattggtgctaagttggaaaaaggctcttcgtgaggcagca |
410 |
Q |
| |
|
|| ||| || |||||||||| | | || |||| ||| | |||||| ||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
5394523 |
gcgtttgaaagtcttttgaacagaattttaaacgaggtggaattggcgctaaattggaaagaggctcttcgtgtggcagca |
5394603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 30 - 409
Target Start/End: Complemental strand, 5264473 - 5264094
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
|||||| |||||||| ||||||||| ||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5264473 |
actcgttcttccttcgtttcacatctatatgcagctcttcaaaatgctggaattaaagtttttagagacgataatgagcttcaaagaggagatcacattt |
5264374 |
T |
|
| Q |
130 |
catcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaa |
229 |
Q |
| |
|
|| ||||||||| ||| |||||||| |||| |||||||| | |||||||| ||||||||||| || ||||| ||||||| ||| ||||| || || |
|
|
| T |
5264373 |
caacatcattattacgtgcaattgaagagtccaaaatttctttaattgttttctcaaaaaattacgccaattcgagatggtgcttggatgaagtgaaaaa |
5264274 |
T |
|
| Q |
230 |
aataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaata |
329 |
Q |
| |
|
||||||||| ||| || || |||||||||| |||||||||| ||||||||| | |||| || |||||||||||| ||| || |||| ||||||||||| |
|
|
| T |
5264273 |
aataatgaagtgttatagaaccataggacaaaaggttgtgccattgttctaccatttagaaccatctgaagtgcgtcatcagacaggagagtttggaata |
5264174 |
T |
|
| Q |
330 |
gcttttcaacgtcttttgaataaagttccaaacaaggagaaattggtgctaagttggaaaaaggctcttcgtgaggcagc |
409 |
Q |
| |
|
|||||||| ||||||||| ||| || ||| | || || ||||||||| |||||||| | ||||||||||| ||||||| |
|
|
| T |
5264173 |
tcttttcaaaatcttttgaacaaaatttcaatcgagaaggaattggtgcaaagttggagagaggctcttcgtcaggcagc |
5264094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 37 - 464
Target Start/End: Original strand, 5393001 - 5393428
Alignment:
| Q |
37 |
cttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatc |
136 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| | |||||| ||||||| | ||||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
5393001 |
cttccttcacttcacatctccttgctgctcttcaaaagtttcgaattacagtttttacatacgataatgtgcttcaaagaggagatcacatttcaacatc |
5393100 |
T |
|
| Q |
137 |
attatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatg |
236 |
Q |
| |
|
||||||| | ||||| | ||||| |||||| ||| |||||||| |||||||||||||| ||||| || |||||||| ||||||||| | |||| || |
|
|
| T |
5393101 |
attatcaagtgcaatcggagagtctaaaatttttataattgttttctcaaaaaattatgccaattcgagacggtgtttggatgaattggaaataatagtg |
5393200 |
T |
|
| Q |
237 |
aattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaatagcttttc |
336 |
Q |
| |
|
|| ||| ||| || ||||||| |||||||||| || |||||||||| ||||| || ||||||||||| ||| || |||| ||||||||||| |||||| |
|
|
| T |
5393201 |
aactgtggtagaaccataggagaagtggttgttccggtgttctaccatgtagcccctactgaagtgcgttatcagaaaggagagtttggaatatcttttc |
5393300 |
T |
|
| Q |
337 |
aacgtcttttgaataaagttccaaacaaggagaaattggtgctaagttggaaaaaggctcttcgtgaggcagcaaacatcgcagggtttccaatagtgaa |
436 |
Q |
| |
|
|| || ||||||| ||| | ||||||||| | |||| | ||||||||||| | ||||||||| |||||| | ||| ||||||||| |||| |||| |
|
|
| T |
5393301 |
aaagttttttgaacaaaacttcaaacaaggtggaattagagctaagttggagagcagctcttcgtcgggcagctagcatagcagggtttttaatactgaa |
5393400 |
T |
|
| Q |
437 |
gtccgggtaatttcattcaacaactact |
464 |
Q |
| |
|
||| ||||||||| |||||||| |||| |
|
|
| T |
5393401 |
ttccaggtaatttcgttcaacaattact |
5393428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 37 - 458
Target Start/End: Complemental strand, 5331995 - 5331573
Alignment:
| Q |
37 |
cttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttata-gacgataatgagcttcaaagaggatatcacatttcatcat |
135 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||| ||||||||||| |||||| | || || ||||| ||||| ||||| ||||||||||| || |
|
|
| T |
5331995 |
cttccttcgtttcacatctatatgcagctcttcaaaatgctggaattaaaatttttaaaagatgacaatgaacttcacggaggagatcacatttcaaaat |
5331896 |
T |
|
| Q |
136 |
cattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataat |
235 |
Q |
| |
|
| |||| ||| |||||||| |||| |||||||| | |||||||| ||||||||||||| ||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
5331895 |
cgttattacgtgcaattgaagagtccaaaatttctttaattgttttctcaaaaaattatgtcaattcgagatggtgtttggatgaattgaaaaaaataat |
5331796 |
T |
|
| Q |
236 |
gaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaatagctttt |
335 |
Q |
| |
|
||| ||| || || |||||||| | |||||||||||||||||||| | |||| || ||| |||||||| ||| || |||| | ||||||| | ||| |
|
|
| T |
5331795 |
gaagtgttatagaaccataggactaaaggttgtgccagtgttctaccatttagaaccatctaaagtgcgtcatcagacaggagattttggaaaattattt |
5331696 |
T |
|
| Q |
336 |
caacgtcttttgaataaagttccaaacaaggagaaattggtgctaagttggaaaaaggctcttcgtgaggcagcaaacatcgcagggtttccaatagtga |
435 |
Q |
| |
|
||| || ||||||| ||| || ||||| ||||| ||||||||| |||||||| | ||||||||||| | ||||| ||||| ||||||| |||| | | |
|
|
| T |
5331695 |
caaagttttttgaacaaaatttcaaacgaggagcaattggtgcaaagttggagagaggctcttcgtcatgcagctaacataaaagggtttgaaatactca |
5331596 |
T |
|
| Q |
436 |
agtccgggtaatttcattcaaca |
458 |
Q |
| |
|
|||| ||||| ||||||||||| |
|
|
| T |
5331595 |
agtcacggtaaattcattcaaca |
5331573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 5108005 - 5107770
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| || |||||||| || ||||||| ||||||| || |||| |||||||| || ||||| |
|
|
| T |
5108005 |
actcgtgcttccttcacttcacatctctatgcttctcttcagaacgctggaatcaacgtttttagagacgatgattcgcttaaaagaggacattgcattt |
5107906 |
T |
|
| Q |
130 |
catcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaa |
229 |
Q |
| |
|
|| |||| || |||||||||||| | ||| ||||||||||||| |||| |||||||||||||| | ||||| |||||| | ||||| ||| ||| |
|
|
| T |
5107905 |
caaaatcaataaaacgagcaattgaagaatctgaaatttctattatcattttctcaaaaaattatgcgaaatcgcgttggtgtctaaatgagttgttgac |
5107806 |
T |
|
| Q |
230 |
aataatgaattgtcgtaaaaacataggacaagtggt |
265 |
Q |
| |
|
|||||| | ||||| | || |||||| || ||||| |
|
|
| T |
5107805 |
gataatggagtgtcgcagaagcatagggcaggtggt |
5107770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 5174029 - 5174236
Alignment:
| Q |
37 |
cttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatc |
136 |
Q |
| |
|
|||| ||||||||||| || || ||| |||||||||| |||||||| ||||||| |||||| || |||||||||||| ||||||||||| ||| |
|
|
| T |
5174029 |
cttcattcacttcacacctatacgcttctcttcaaaacaatggaattagcgtttttaaggacgatgattcacttcaaagaggagatcacatttcaaaatc |
5174128 |
T |
|
| Q |
137 |
attatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatg |
236 |
Q |
| |
|
| || || ||||||||| |||||||||||||| |||| |||| |||||||| ||||| ||||| || ||||||||| |||| ||||||||||||||| |
|
|
| T |
5174129 |
actactacaagcaattgaagagtctcaaatttctgttatcattttctcaaaaaactatgcagattcacggtggtgtttggatgagttggtgaaaataatg |
5174228 |
T |
|
| Q |
237 |
aattgtcg |
244 |
Q |
| |
|
|| ||||| |
|
|
| T |
5174229 |
aaatgtcg |
5174236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 30 - 349
Target Start/End: Original strand, 5340433 - 5340752
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| |||||||| |||||||||| ||||||| ||||||| || |||||||||||| |||| |||| |
|
|
| T |
5340433 |
actcgtgtatccttcacttcacatctctatgctgcacttcaaaatgctggaattactgtttttagagacgatgattcgcttcaaagaggtgatcaaattt |
5340532 |
T |
|
| Q |
130 |
catcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaa |
229 |
Q |
| |
|
|| ||||| || |||| ||||||| | ||||||||||| | |||||||| || | |||||| | ||||| ||||||| || |||||||||||| |
|
|
| T |
5340533 |
caacatcactactacgaacaattgaactaactcaaatttctgtgattgttttctcgagcaattattccgattcaaaatggtgtctggatgaattggtgag |
5340632 |
T |
|
| Q |
230 |
aataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaata |
329 |
Q |
| |
|
||||||||| ||||| | || | ||||||||| ||| | || | |||||| ||| |||||||| ||| | ||| ||| | |||| ||||||||| | |
|
|
| T |
5340633 |
aataatgaaatgtcgcagaactacaggacaagttgttctaccgatattctacgatgttgatccctcagaaatacgtcatcaaacaggagagtttggaaaa |
5340732 |
T |
|
| Q |
330 |
gcttttcaacgtcttttgaa |
349 |
Q |
| |
|
|| |||||| ||||||||| |
|
|
| T |
5340733 |
gcatttcaaaatcttttgaa |
5340752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 5092817 - 5093085
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
|||||||| || |||||||||||||| |||||| | |||||||| ||||||||||| ||||||| || ||| || ||||||||||||| |||| || |
|
|
| T |
5092817 |
actcgtgcatcattcacttcacatctctatgcttcacttcaaaatgctggaattaatgtttttagggatgatgattcgcttcaaagaggagatcaaat-- |
5092914 |
T |
|
| Q |
130 |
catcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaa |
229 |
Q |
| |
|
|||||||||| | | ||||| |||||| ||||||| | ||||||||||||| ||||||||| ||||||||||||||| | |||| || || || |
|
|
| T |
5092915 |
-atcatcattacttcaattgattgaagagtctcgaatttctgtgattgttttttcaagaaattatgcagattcgcgatggtgtctagatgagttagtaaa |
5093013 |
T |
|
| Q |
230 |
aataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagt |
301 |
Q |
| |
|
|||||| | |||| || |||||| || | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5093014 |
gataatggagtgtcagcgaaccatagggcagatagttgtgccagtgttctacgatgtagatccctctgaagt |
5093085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 5422082 - 5422288
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
|||||||| || |||||||||||||| |||||| |||||||||| |||||||| ||||| | |||||| || ||||||||||||| ||||||||| |
|
|
| T |
5422082 |
actcgtgcatcattcacttcacatctctatgcttctcttcaaaattacggaattaaagttttcagggacgatgattcgcttcaaagaggagatcacattt |
5422181 |
T |
|
| Q |
130 |
catcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaa |
229 |
Q |
| |
|
|| ||||| | |||||||||||| ||||||| ||| ||||| || ||||| |||| |||||| || ||||| | ||||||| | |||| ||| |||| |
|
|
| T |
5422182 |
caacatcactcctacgagcaattgaacagtctcgaatgtctatcatagttttctcaacaaattacgcggattcacaatggtgtcttgatgagttgttgaa |
5422281 |
T |
|
| Q |
230 |
aataatg |
236 |
Q |
| |
|
||||||| |
|
|
| T |
5422282 |
aataatg |
5422288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 5360796 - 5360904
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||||| |||||||| | ||||||||| ||||||| ||||||| ||||||||| |||||||||||||| | |
|
|
| T |
5360796 |
actcgttcttccttcacttcacatctctacgctgcacttcaaaatgttggaattaaagtttttaaagacgatggtgagcttcatagaggatatcacatct |
5360895 |
T |
|
| Q |
130 |
catcatcat |
138 |
Q |
| |
|
|| |||||| |
|
|
| T |
5360896 |
caacatcat |
5360904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 301
Target Start/End: Original strand, 5429490 - 5429749
Alignment:
| Q |
42 |
ttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattat |
141 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||||||| ||||||| || ||| | ||| || ||||| ||||||||||| || |||||| |
|
|
| T |
5429490 |
ttcacttcacatctctatgcttctcttcaaaatgctggaattactgtttttagggatgatgtttctcttaaaggaggagatcacatttcaacaacattat |
5429589 |
T |
|
| Q |
142 |
cacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattg |
241 |
Q |
| |
|
||| |||||||| ||||||| ||||||| |||| ||||||||| |||||| || || |||||||||||| | | || |||||||| |||||| | || |
|
|
| T |
5429590 |
cacacgcaattgaacagtctcgaatttctgttatcattttttcaacaaattacgcggaatcgcgatggtgtcttgaggagttggtgaagataatggagtg |
5429689 |
T |
|
| Q |
242 |
tcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagt |
301 |
Q |
| |
|
|| | || ||||| ||| | ||| | ||| |||||||| |||||||||| ||| |||| |
|
|
| T |
5429690 |
tcagagaactataggtcaaattgttcttccattgttctacggtgtagatccatctcaagt |
5429749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 5149915 - 5149711
Alignment:
| Q |
42 |
ttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattat |
141 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||||||||||| ||||||| || ||| || ||| |||||||| ||||||||||| ||||| || |
|
|
| T |
5149915 |
ttcacttcacatctctatgcttctcttcaaaatgctggaattaaagtttttagggatgatgattctcttaaaagaggagatcacatttcaacatcaatac |
5149816 |
T |
|
| Q |
142 |
cacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattg |
241 |
Q |
| |
|
| ||| || | ||||||| || ||| | ||||||||||||| ||| ||||| |||||||||||||| | | || ||||||||||||||| |||| |
|
|
| T |
5149815 |
atctagctatccaaaagtctcagatctctgtgattgttttttcaagaaactatgcaaattcgcgatggtgtctcgaagagttggtgaaaataatggattg |
5149716 |
T |
|
| Q |
242 |
tcgta |
246 |
Q |
| |
|
||||| |
|
|
| T |
5149715 |
tcgta |
5149711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 338
Target Start/End: Complemental strand, 5160723 - 5160415
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||| |||||||| |||||| |||| ||||||| |||||| || ||| |||||||| |||| || |
|
|
| T |
5160723 |
actcgtgcatcattcacttcacatctctatgctgcacttcaaaacgctggacttaacgtttttagggacgatgattctcttgaaagaggagatcaaatac |
5160624 |
T |
|
| Q |
130 |
catcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaa |
229 |
Q |
| |
|
|| |||||||| | | ||||| | |||| ||||||| | ||||||||||||| ||||||||| ||||||||||||||| | ||||| || || || |
|
|
| T |
5160623 |
caacatcattacttcattcgattgaagaatctcgaatttctgtgattgttttttcaagaaattatgcggattcgcgatggtgtctaaatgagttagtaaa |
5160524 |
T |
|
| Q |
230 |
aataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaata |
329 |
Q |
| |
|
||||| | |||| || |||||| || | ||| |||||||||||||| |||||||||||||||||| ||| | | || ||| |||||||| | | |
|
|
| T |
5160523 |
ggtaatggagtgtcagctaaccatagggcagatagttttgccagtgttctacgatgtagatccctctgaagtacgtcaccagaaaggcaagtttggtaaa |
5160424 |
T |
|
| Q |
330 |
gcttttcaa |
338 |
Q |
| |
|
|| |||||| |
|
|
| T |
5160423 |
gcatttcaa |
5160415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 5137825 - 5137640
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
|||||| | ||||||||||||||||| | | |||||||||||||||||||||| || || || |||||| || |||||||||||| ||||||||| |
|
|
| T |
5137825 |
actcgttcatccttcacttcacatcttcactcatctcttcaaaaggctggaattaaagtcttcatggacgatgattcacttcaaagaggagatcacattt |
5137726 |
T |
|
| Q |
130 |
catcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttg |
215 |
Q |
| |
|
|| ||||| ||| | | ||||||| | |||||||||||| |||||||||| || | |||||||||| || |||||||||||| |
|
|
| T |
5137725 |
caacatcactattgcaatcaattgaccgatctcaaatttctcttattgttttctccactaattatgctggatcccgatggtgtttg |
5137640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 5380324 - 5380453
Alignment:
| Q |
108 |
cttcaaagaggatatcacatttcatcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgat |
207 |
Q |
| |
|
|||||||||||| |||| |||||| ||| ||| | | || |||||| || ||| |||||||||||||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
5380324 |
cttcaaagaggagatcatatttcaacattgttaccgcaagaaattgaacattctaaaatttctattattgttttttcaagaaattatgcagattcacgat |
5380423 |
T |
|
| Q |
208 |
ggtgtttgaatgaattggtgaaaataatga |
237 |
Q |
| |
|
||||| | |||| |||||||| ||||||| |
|
|
| T |
5380424 |
ggtgtcttgatgagttggtgaagataatga |
5380453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 5358359 - 5358080
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
|||| ||||| ||||||||||||||| |||||| | |||||||| ||||| || ||||||| || ||| || |||||||| ||| ||||||||| |
|
|
| T |
5358359 |
actcatgcttgcttcacttcacatctctatgcttcccttcaaaatctcggaatcaacgtttttaaggatgatcattcacttcaaaggggagatcacattt |
5358260 |
T |
|
| Q |
130 |
catcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgt-ttgaatgaattggtga |
228 |
Q |
| |
|
|| |||| || | ||||||| | | |||||||||||| |||| ||||| |||| ||||||||| || |||| ||||||| ||||| || |||||| |
|
|
| T |
5358259 |
caaaatcactaatgcaagcaattcaagattctcaaatttctgttatcgttttctcaacaaattatgcagaatcgcaatggtgtcttgaa-gagttggtgg |
5358161 |
T |
|
| Q |
229 |
aaataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatc |
309 |
Q |
| |
|
| |||||||| ||||| | || ||| ||||| ||| |||||||||||||| |||||||||| |||||||| ||||||| |
|
|
| T |
5358160 |
agataatgaagtgtcgcagaattcaaggccaagttgttttgccagtgttctacggtgtagatccatctgaagtacgtaatc |
5358080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 301
Target Start/End: Original strand, 5366388 - 5366656
Alignment:
| Q |
33 |
cgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcat |
132 |
Q |
| |
|
||||| || |||||||| ||||| |||||| |||||||||| || ||| || ||||| | ||||| || ||||||||||||| ||||||||||| |
|
|
| T |
5366388 |
cgtgcatctttcacttcgcatctctatgcttctcttcaaaacgccggatttcgtgttttcagggacgacgattcgcttcaaagaggagatcacatttcaa |
5366487 |
T |
|
| Q |
133 |
catcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaat |
232 |
Q |
| |
|
||||| | | ||||||||||| ||| ||| ||||||||| || ||||||||||||||||| || | |||||||||||| | |||| ||| ||| || |
|
|
| T |
5366488 |
catcactcttgcgagcaattgaacagactcgaatttctatcatcgttttttcaaaaaattacgcccaatcgcgatggtgtcttgatgagttgttgaggat |
5366587 |
T |
|
| Q |
233 |
aatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagt |
301 |
Q |
| |
|
|||| | |||| |||| ||| |||||| | ||| | |||||||||| | ||||||||| || ||||| |
|
|
| T |
5366588 |
aatggagtgtcagaaaaccattggacaaattgttcttccagtgttcttcaatgtagatccatcggaagt |
5366656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 279
Target Start/End: Complemental strand, 5070635 - 5070393
Alignment:
| Q |
37 |
cttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatc |
136 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||| ||| ||||||| || ||||||| || || || |||||||||||| ||||||||||| |||| |
|
|
| T |
5070635 |
cttcattcacttcacatctctatgcttctcttcgaaactctggaatcaaagtttttagggaagacgattctcttcaaagaggagatcacatttcaacatc |
5070536 |
T |
|
| Q |
137 |
attatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatg |
236 |
Q |
| |
|
| | |||||||||||| ||||||| ||| ||||| || |||| || | ||||||||| || || ||||||||| | |||| |||||||| |||||| |
|
|
| T |
5070535 |
actcctacgagcaattgaacagtctcgaatgtctatcatcattttctcgacaaattatgcggaatcacgatggtgtcttgatgagttggtgaagataatg |
5070436 |
T |
|
| Q |
237 |
aattgtcgtaaaaacataggacaagtggttgtgccagtgttct |
279 |
Q |
| |
|
| ||| || || ||| |||||| | ||| |||||||||||| |
|
|
| T |
5070435 |
gaatgtaatagaaccattggacaaattgttctgccagtgttct |
5070393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 5693131 - 5692942
Alignment:
| Q |
47 |
ttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacga |
146 |
Q |
| |
|
||||||||| |||||| |||||| ||| |||||| || |||||||| |||||| || |||| ||||||| |||||||| || ||||| || || | |
|
|
| T |
5693131 |
ttcacatctatatgcttctcttctaaatgctggagttttcgtttttatggacgatgattcacttccaagaggagatcacattgcaacatcactactacaa |
5693032 |
T |
|
| Q |
147 |
gcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatg |
236 |
Q |
| |
|
||||| || ||||| ||||||| |||| ||||| |||||||| ||||| |||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
5693031 |
gcaatcgaagagtctataatttctgttatagttttctcaaaaaactatgcagattcgtcgtggtgtttgaatgagttggttaaaataatg |
5692942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 195
Target Start/End: Original strand, 5272896 - 5273054
Alignment:
| Q |
37 |
cttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatc |
136 |
Q |
| |
|
|||| |||||||||||||| || ||| |||||||||| ||||||||| ||||||| ||| || || |||||||||||| ||||||||||| ||| |
|
|
| T |
5272896 |
cttcattcacttcacatctatacgcttctcttcaaaacaatggaattaacgtttttaaggacaatgatttacttcaaagaggagatcacatttcaaaatc |
5272995 |
T |
|
| Q |
137 |
attatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatg |
195 |
Q |
| |
|
| || || ||||||||| ||||||||||||| |||| |||| |||||||| |||| |
|
|
| T |
5272996 |
actactactagcaattgaaaggtctcaaatttctgttatcattttctcaaaaaactatg |
5273054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 301
Target Start/End: Complemental strand, 5077193 - 5077037
Alignment:
| Q |
145 |
gagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcg |
244 |
Q |
| |
|
|||||||||| ||||| |||| |||||| |||||||||| ||||||||| | |||||||||||||||| || |||| |||||||||| | ||| |
|
|
| T |
5077193 |
gagcaattgaagagtctagaattgttattatagttttttcaagaaattatgcgggatcgcgatggtgtttgatagagttggagaaaataatggagtgtta |
5077094 |
T |
|
| Q |
245 |
taaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagt |
301 |
Q |
| |
|
|| || ||||||| ||||||| | || || || ||| |||||||||| |||||||| |
|
|
| T |
5077093 |
tagaactataggactagtggttctaccggttttttacggtgtagatccatctgaagt |
5077037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 30 - 347
Target Start/End: Original strand, 4296 - 4613
Alignment:
| Q |
30 |
actcgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacattt |
129 |
Q |
| |
|
|||||| || ||||| ||||||||| ||| | ||||||| ||| |||| |||||| |||||| |||||||| || ||||||||||||| || |||||| |
|
|
| T |
4296 |
actcgttctaccttcgtttcacatctatatacagctcttcgaaatgctgaaattaaagtttttcaagacgatagtgggcttcaaagaggagattacattt |
4395 |
T |
|
| Q |
130 |
catcatcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaa |
229 |
Q |
| |
|
|| ||||||||| ||| |||||||| |||||||||||||| | |||||||| |||||||| ||||| |||| |||||||||| ||||||||| || |
|
|
| T |
4396 |
caacatcattattacgtgcaattgaagagtctcaaatttctttaattgttttctcaaaaaactatgccaattcaaaatggtgtttggatgaattggataa |
4495 |
T |
|
| Q |
230 |
aataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaata |
329 |
Q |
| |
|
|||||||| ||| || || |||||||||| ||||||||| ||||| |||| | |||| || ||||||||||| ||| || |||| |||||||| || |
|
|
| T |
4496 |
aataatgatgtgttatagaaccataggacaaaaggttgtgcctgtgttttaccatttagaaccatctgaagtgcgccatcagacaggagagtttggagta |
4595 |
T |
|
| Q |
330 |
gcttttcaacgtcttttg |
347 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
4596 |
tcttttcaaagtcttttg |
4613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 456
Target Start/End: Original strand, 4676 - 4764
Alignment:
| Q |
368 |
gaaattggtgctaagttggaaaaaggctcttcgtgaggcagcaaacatcgcagggtttccaatagtgaagtccgggtaatttcattcaa |
456 |
Q |
| |
|
||||||||||| || ||||| | ||| ||||||| ||||||| | ||| ||||||||| |||| | ||||| ||||||||||||||| |
|
|
| T |
4676 |
gaaattggtgcaaaattggagagaggatcttcgtcaggcagctagcattgcagggtttgaaatactcaagtcacggtaatttcattcaa |
4764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 47 - 336
Target Start/End: Complemental strand, 22589318 - 22589029
Alignment:
| Q |
47 |
ttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattatcacga |
146 |
Q |
| |
|
||||||||| ||| | ||||||| ||| |||| |||||| |||||| |||||||| || ||||||||||||| || |||||||| ||||||||| || |
|
|
| T |
22589318 |
ttcacatctatatacagctcttcgaaatgctgtaattaaagtttttcaagacgatagtgggcttcaaagaggagattacatttcaacatcattattccgt |
22589219 |
T |
|
| Q |
147 |
gcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtcgta |
246 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||| |||||||| ||||| |||| |||||||||| ||||||||| ||||||||||| ||| | |
|
|
| T |
22589218 |
gcaattgaagagtctcaaatttctttaattgttttctcaaaaaactatgccaattcaaaatggtgtttggatgaattggaaaaaataatgaagtgttaca |
22589119 |
T |
|
| Q |
247 |
aaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaatagcttttc |
336 |
Q |
| |
|
|| |||||||||| ||||||| | |||||||||| | |||| || ||||||||||| ||| || |||| ||||||||||| |||||| |
|
|
| T |
22589118 |
gaaccataggacaaaaggttgtgtctgtgttctaccatttagaaccatctgaagtgcgccatcagacaggagagtttggaatatcttttc |
22589029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 34729877 - 34729707
Alignment:
| Q |
42 |
ttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcatcatcattat |
141 |
Q |
| |
|
|||| ||||||||| ||| | |||||| |||| ||||||||| | ||||||| ||| ||| ||||| ||||| |||| |||| || ||| | ||||| | |
|
|
| T |
34729877 |
ttcatttcacatctctatacagctcttgaaaatgctggaatttatgtttttagagatgatgatgagattcaacgaggtgatcagatctcagcgtcattgt |
34729778 |
T |
|
| Q |
142 |
cacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgt |
212 |
Q |
| |
|
| |||||||||||||||| |||||||||| ||||||| || | || ||||||||||| |||||||| |
|
|
| T |
34729777 |
tgcaagcaattgagcagtctaaaatttctatcgttgttttgtctagaagctatgctgattcaagatggtgt |
34729707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 34715210 - 34715142
Alignment:
| Q |
45 |
acttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaa |
113 |
Q |
| |
|
||||||||||| ||| | |||||||||| ||||||||| | ||||||| ||||||||||||| ||||| |
|
|
| T |
34715210 |
acttcacatctctatacctctcttcaaaatgctggaatttatgtttttagagacgataatgagattcaa |
34715142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 34719976 - 34719906
Alignment:
| Q |
42 |
ttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttca |
112 |
Q |
| |
|
|||| ||||||||| ||| | |||||||||| ||| ||||||| ||||||| ||||||||||||| |||| |
|
|
| T |
34719976 |
ttcatttcacatctctatacctctcttcaaaatgctagaattaatgtttttagagacgataatgagattca |
34719906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 301
Target Start/End: Complemental strand, 48016344 - 48016077
Alignment:
| Q |
33 |
cgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggtttttatagacgataatgagcttcaaagaggatatcacatttcat |
132 |
Q |
| |
|
||||||||||| ||||| ||||| |||||| |||||||||| |||||||||| |||| || |||||| | | ||||| || ||| || |||| | |
|
|
| T |
48016344 |
cgtgcttcctttacttcgcatctctatgcttctcttcaaaactctggaattaacgtttatagggacgatcacgcgcttccaaagggagatggcattccga |
48016245 |
T |
|
| Q |
133 |
catcattatcacgagcaattgagcagtctcaaatttctattattgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaat |
232 |
Q |
| |
|
|||||||| |||| |||| | ||||||||||||||||||||||||| ||||| || |||| || || | |||||| || |||| ||| || |||| |
|
|
| T |
48016244 |
catcattaaaacgaacaatcaaa-agtctcaaatttctattattgttttctcaaagaactatgtggaatcaagttggtgtatggatgagttgctggaaat |
48016146 |
T |
|
| Q |
233 |
aatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagt |
301 |
Q |
| |
|
||| | |||| |||| |||||| ||||||||| |||| ||||| ||| ||||||||| || ||||| |
|
|
| T |
48016145 |
catggagtgtcacaaaaccataggccaagtggttctgccggtgttttacaatgtagatccatcggaagt |
48016077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 335
Target Start/End: Complemental strand, 6501228 - 6501157
Alignment:
| Q |
264 |
gttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaatagctttt |
335 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||| ||| || ||| |||||||||| ||||||| |
|
|
| T |
6501228 |
gttgtgccagtgttctacgaggtagatccctctgaagtacgtcatcagaaaggtaagtttggaaaagctttt |
6501157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 25567065 - 25567133
Alignment:
| Q |
175 |
ttgttttttcaaaaaattatgctgattcgcgatggtgtttgaatgaattggtgaaaataatgaattgtc |
243 |
Q |
| |
|
||||||||||||| |||| || ||||| ||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
25567065 |
ttgttttttcaaagcattacgcggattcaaaatggtgtttgaatgagttggtgaagataatgaagtgtc |
25567133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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