View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1304_low_46 (Length: 463)

Name: NF1304_low_46
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1304_low_46
NF1304_low_46
[»] chr4 (2 HSPs)
chr4 (102-385)||(54396756-54397039)
chr4 (221-361)||(23587309-23587449)
[»] chr2 (5 HSPs)
chr2 (102-152)||(12235022-12235072)
chr2 (102-145)||(12245198-12245241)
chr2 (102-148)||(7542559-7542605)
chr2 (332-373)||(17703613-17703654)
chr2 (105-145)||(16657309-16657349)
[»] chr7 (8 HSPs)
chr7 (102-142)||(17260574-17260614)
chr7 (102-145)||(7877525-7877568)
chr7 (102-148)||(8659696-8659742)
chr7 (102-151)||(1301797-1301846)
chr7 (102-151)||(10494160-10494209)
chr7 (102-151)||(13333242-13333291)
chr7 (102-142)||(6789845-6789885)
chr7 (102-142)||(8585501-8585541)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 102 - 385
Target Start/End: Original strand, 54396756 - 54397039
Alignment:
Q  102 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatcaacaccattg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396756 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatcaacaccattg 54396855  T
Q  202 aagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaacaacgatcataggtttttcagcgggacctggaacgactttaaacggccatag 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396856 aagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaacaacgatcataggtttttcagcgggacctggaacgactttaaacggccatag 54396955  T
Q  302 tttcatgtcgttttgaactgattcatcggagaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcat 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54396956 tttcatgtcgttttgaactgattcatcggagaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtggattcat 54397039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 361
Target Start/End: Complemental strand, 23587449 - 23587309
Alignment:
Q  221 aaatttcttctcttcacctttgtaattaacaacgatcataggtttttcagcgggacctggaacgactttaaacggccatagtttcatgtcgttttgaact 320  Q
    ||||| |||||||||  ||||||| || || |||||||| ||||| ||||| || || |||| ||| || |||||||| | |||||||||| | || |||    
T  23587449 aaattgcttctcttccgctttgtagttcaccacgatcattggtttgtcagcagggccaggaatgaccttgaacggccacaatttcatgtcgctctgtact 23587350  T
Q  321 gattcatcggagaatctacgaccaattaaacgcttagcatc 361  Q
    ||  |||||   ||||  | ||||||||| |||||||||||    
T  23587349 gaaacatcgccaaatcgcctaccaattaatcgcttagcatc 23587309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 12235022 - 12235072
Alignment:
Q  102 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgga 152  Q
    ||||||||||||||||||||||| || |||||||| |||||||| ||||||    
T  12235022 tgagaatcattgaaataagcaggcacggtaacaactgcattcttaactgga 12235072  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 12245241 - 12245198
Alignment:
Q  102 tgagaatcattgaaataagcaggaacagtaacaacagcattctt 145  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||    
T  12245241 tgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 7542559 - 7542605
Alignment:
Q  102 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 148  Q
    ||||||||||| ||||||||||| ||||||||||| |||||| ||||    
T  7542559 tgagaatcattaaaataagcaggtacagtaacaactgcattcgtcac 7542605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 17703654 - 17703613
Alignment:
Q  332 gaatctacgaccaattaaacgcttagcatcgaagacggtgtt 373  Q
    ||||||||||||||| || | |||||||||||||||||||||    
T  17703654 gaatctacgaccaatcaacctcttagcatcgaagacggtgtt 17703613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 16657349 - 16657309
Alignment:
Q  105 gaatcattgaaataagcaggaacagtaacaacagcattctt 145  Q
    ||||||||||| ||||| || ||||||||||||||||||||    
T  16657349 gaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 17260574 - 17260614
Alignment:
Q  102 tgagaatcattgaaataagcaggaacagtaacaacagcatt 142  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  17260574 tgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 7877568 - 7877525
Alignment:
Q  102 tgagaatcattgaaataagcaggaacagtaacaacagcattctt 145  Q
    |||||||||||||||||||| || ||||||||||| ||||||||    
T  7877568 tgagaatcattgaaataagccggcacagtaacaactgcattctt 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 8659696 - 8659742
Alignment:
Q  102 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 148  Q
    |||||||||||||| || ||||| || ||||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttcac 8659742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 1301797 - 1301846
Alignment:
Q  102 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 151  Q
    ||||||||||||||||  ||||| |||||||||||||||||  |||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactgg 1301846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 10494209 - 10494160
Alignment:
Q  102 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 151  Q
    |||||||| ||||| ||||| || |||||||||||||||||||| |||||    
T  10494209 tgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactgg 10494160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 13333291 - 13333242
Alignment:
Q  102 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 151  Q
    |||||||||||||| ||||| || ||||||||||| |||||||| |||||    
T  13333291 tgagaatcattgaagtaagccggcacagtaacaacggcattcttgactgg 13333242  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 6789845 - 6789885
Alignment:
Q  102 tgagaatcattgaaataagcaggaacagtaacaacagcatt 142  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  6789845 tgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 8585541 - 8585501
Alignment:
Q  102 tgagaatcattgaaataagcaggaacagtaacaacagcatt 142  Q
    ||||||||||||||||||||||| ||||| ||||| |||||    
T  8585541 tgagaatcattgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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