View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_48 (Length: 445)
Name: NF1304_low_48
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 42423316 - 42423717
Alignment:
| Q |
16 |
attgtccattggtaagaataaaagtgatgagtttcttgtcttcctcagctgtccatggacctttcttcacaccaagtttgtcacaacaaggttgtctccc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42423316 |
attgtccattggtaagaataaaagtgatgagtttcttgtcttcctcagctgtccatggacctttcttcacaccaagtttgtcacaacaaggttgtctccc |
42423415 |
T |
|
| Q |
116 |
cataactcacgaccaatgcaagtccttcaaagtaatgcaaaagtaaaagtctcaccaacactgtctttatatatagccctcacctttttctattgtaatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42423416 |
cataactcacgaccaatgcaagtccttcaaagtaatgcaaaagtaaaagtctcaccaacactgtctttatatatagccctcacctttttctattgtaatt |
42423515 |
T |
|
| Q |
216 |
aattaaatcataagtaataaaaatgtgcataattnnnnnnnttataaagtttttaggggacaatgataaacaggagaaggttggaggggtccactatggg |
315 |
Q |
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| T |
42423516 |
aattaaatcataagtaataaaaatgtgcataattaaaaaaattataaagtttttaggagacaatgataaacaggagaaggttggaggggtccactatggg |
42423615 |
T |
|
| Q |
316 |
ttgtgaaaggtatgtgggaactaatataaggaattctagtgtttcctatctgcgcaaaattggtgatgctgaaagatgtgtgacccaatagcatggattt |
415 |
Q |
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| T |
42423616 |
ttgtgaaaggtatgtgggaactaatataaggaattctggtgtttcctatctgcgcaaaattggtgatgctgaaagatgtgtgacccaatagcatggattt |
42423715 |
T |
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| Q |
416 |
gt |
417 |
Q |
| |
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|| |
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| T |
42423716 |
gt |
42423717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 31999741 - 31999676
Alignment:
| Q |
42 |
atgagtttcttgtcttcctcagctgtccatggacctttcttcacaccaagtttgtcacaacaaggt |
107 |
Q |
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| T |
31999741 |
atgagtttttggtcttcctcagcagtccatggtcctttcttcaatccaactttctcacaacaaggt |
31999676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 29570259 - 29570157
Alignment:
| Q |
16 |
attgtccattggtaagaataaaagtgatgagtttcttgtcttcctcagctgtccatggacctttcttcacaccaagtttgtcacaacaaggttgtctccc |
115 |
Q |
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|||| ||||| ||||| || ||| ||||||| || || ||||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||| || |
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| T |
29570259 |
attgaccattagtaaggatgaaattgatgagctttttatcttcctcagcagtccatggtcctttcttcaatccaactttgtcacaacaaggttgtcttcc |
29570160 |
T |
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| Q |
116 |
cat |
118 |
Q |
| |
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||| |
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|
| T |
29570159 |
cat |
29570157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 33378347 - 33378245
Alignment:
| Q |
16 |
attgtccattggtaagaataaaagtgatgagtttcttgtcttcctcagctgtccatggacctttcttcacaccaagtttgtcacaacaaggttgtctccc |
115 |
Q |
| |
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|||| ||||| ||||| || ||| ||||||| ||| ||||||| || || |||||||| ||||| |||| || | |||||||||||||||||| || || |
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| T |
33378347 |
attgaccattagtaaggatgaaattgatgagcttcctgtcttcttctgcagtccatggcccttttttcaatcctactttgtcacaacaaggttgccttcc |
33378248 |
T |
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| Q |
116 |
cat |
118 |
Q |
| |
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||| |
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|
| T |
33378247 |
cat |
33378245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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