View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1304_low_49 (Length: 444)
Name: NF1304_low_49
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_49 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 109 - 415
Target Start/End: Complemental strand, 41342858 - 41342548
Alignment:
| Q |
109 |
atactctttcatgggaggaatgaatgttatttgctttcatcatcacaattattgtccaattgctaagttgtgatcaacacatgaccatcacaagg-taag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
41342858 |
atactctttcatgggaggaatgaatgttatttgctttcatcatcacaatcattgtccaattgctaagttgtgatcaacacatgaccatcacaaagataag |
41342759 |
T |
|
| Q |
208 |
attactaaaactctaacttgaaagcccaccaacnnnnnnntctaatgttttaaaatttgttttaggcttcaccgactaatgaaaattctttgaccggcta |
307 |
Q |
| |
|
| |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41342758 |
actactaaaactctaacttgaa-gcccaccaacaaaaaaatctcatgttttaaaatttgttttaggcttcaccgactaatgaaaattctttgaccggcta |
41342660 |
T |
|
| Q |
308 |
gagtcaacattatatatttaagattgaatctgtaaaaacttaagagccaacttattgtttctc----ttaccttcattggcttccaatcgaagtggaagt |
403 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41342659 |
gagtcaacattatatatttaagatagaatatttaaaaacttaagagccaacttattgtttctcttacttaccttcattggcttccaatcgaagtggaagt |
41342560 |
T |
|
| Q |
404 |
gagagttcaagt |
415 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41342559 |
gagagttcaagt |
41342548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 41342964 - 41342877
Alignment:
| Q |
26 |
agattattctccagttaatgtattgtagagcattatacatctttgtttgtggcatatagtaaacttatttgtaaatattcaaaatact |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41342964 |
agattcttctccagttaatgtattgtagagcattatacatctttgtttgtggcatatagtaaacttatttgtaaatattcaaaatact |
41342877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University