View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_52 (Length: 433)
Name: NF1304_low_52
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_52 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: scaffold0283 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 21641 - 22045
Alignment:
| Q |
16 |
atagtgttttcttaccaacaagcacatatatcgttttatgctcgacctgtattgagaaatgtaaagcacataatagaattggccccaggagttgccacca |
115 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21641 |
atagtgttttcttaccaaaaagcacatatatcgtttgatgctcgacctgtattgagaaatgtaaagcacataatagaattggcaccaggagttgccacca |
21740 |
T |
|
| Q |
116 |
tctctcatgaagtgcatttggtacgtaatgaagcaatcattcaatcattacttcatttgattatgttaaatgcatattagtatttcttatatacaaccag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21741 |
tctctcatgaagtgcatttggtacgtaatgaagcaatcattcaatcattacttcatttgattatgttaaatgcatattagtatttcttatatacaaccag |
21840 |
T |
|
| Q |
216 |
atggaagacagttaaagagtcggtttttgagcaccaaagtcaattgcctagaagaattgacttttgaatcacataaatctatacatgacatgaggtgtaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
21841 |
atggaagacagttaaagagtcggtttttgagcaccaaagtcaattgcctagaagaattgacttttgaatcacataaatctatacatgacatgatgtg-aa |
21939 |
T |
|
| Q |
316 |
gttattttcatcatactctacacctcaaattaaggttttgcccaaagatgcttatagtgataatagttctttcatatgttcgtgatggctcttcaacatc |
415 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21940 |
gtaattttcatcatactctacacctcaaattaaggttttgcccaaagatgcttatagtgataatagttctttcatatgctcgtgatggctcttcaacatc |
22039 |
T |
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| Q |
416 |
tatatt |
421 |
Q |
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|||||| |
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| T |
22040 |
tatatt |
22045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 42746271 - 42745867
Alignment:
| Q |
16 |
atagtgttttcttaccaacaagcacatatatcgttttatgctcgacctgtattgagaaatgtaaagcacataatagaattggccccaggagttgccacca |
115 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42746271 |
atagtgttttcttaccaaaaagcacatatatcgtttgatgctcgacctgtattgagaaatgtaaagcacataatagaattggcaccaggagttgccacca |
42746172 |
T |
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| Q |
116 |
tctctcatgaagtgcatttggtacgtaatgaagcaatcattcaatcattacttcatttgattatgttaaatgcatattagtatttcttatatacaaccag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42746171 |
tctctcatgaagtgcatttggtacgtaatgaagcaatcattcaatcattacttcatttgattatgttaaatgcatattagtatttcttatatacaaccag |
42746072 |
T |
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| Q |
216 |
atggaagacagttaaagagtcggtttttgagcaccaaagtcaattgcctagaagaattgacttttgaatcacataaatctatacatgacatgaggtgtaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
42746071 |
atggaagacagttaaagagtcggtttttgagcaccaaagtcaattgcctagaagaattgacttttgaatcacataaatctatacatgacatgatgtg-aa |
42745973 |
T |
|
| Q |
316 |
gttattttcatcatactctacacctcaaattaaggttttgcccaaagatgcttatagtgataatagttctttcatatgttcgtgatggctcttcaacatc |
415 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42745972 |
gtaattttcatcatactctacacctcaaattaaggttttgcccaaagatgcttatagtgataatagttctttcatatgctcgtgatggctcttcaacatc |
42745873 |
T |
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| Q |
416 |
tatatt |
421 |
Q |
| |
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|||||| |
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| T |
42745872 |
tatatt |
42745867 |
T |
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