View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_53 (Length: 431)
Name: NF1304_low_53
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 98 - 419
Target Start/End: Original strand, 2215173 - 2215494
Alignment:
| Q |
98 |
aaaataaggatgatatcaggtcaatggaaactaatgtattgtttgaatagttgacttgggtcaatttttgtagatacatatgcattagaagttatttttc |
197 |
Q |
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| T |
2215173 |
aaaataaggatgatatcaggtcaatggaaactaatgcattgtttgaatagttgacttgggtcaatttttgtagatacatatgcattagaagttatttttc |
2215272 |
T |
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| Q |
198 |
taaacctcattacaagtatggctagcagaaattaatgtctcttttgctacttctataaacatattgtggtttccattcctaatttgacttttaatacttg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215273 |
taaacctcattacaagtatggctagcagaaattaatgtctcttttgctacttctataaacatattgtggtttccattcctaatttgacttttaatacttg |
2215372 |
T |
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| Q |
298 |
ctacagggtgaaagtcagagttttgatttacctgtaaagaaaagaagcgatatttgtacaataatgtatactagcggaactactggtgaccccaagggag |
397 |
Q |
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| T |
2215373 |
ccacagggtgaaagtcagagttttgatttacctgtaaagaaaagaagcgatatttgtacaataatgtatactagcggaactactggtgaccccaagggag |
2215472 |
T |
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| Q |
398 |
tattgatatccaataggagtat |
419 |
Q |
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|||||||||||||||||||||| |
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| T |
2215473 |
tattgatatccaataggagtat |
2215494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 98 - 411
Target Start/End: Original strand, 2202576 - 2202889
Alignment:
| Q |
98 |
aaaataaggatgatatcaggtcaatggaaactaatgtattgtttgaatagttgacttgggtcaatttttgtagatacatatgcattagaagttatttttc |
197 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
2202576 |
aaaataaggatgatatcaggtcaatggaaacttatgcattgattggttagttgacttgggtcaatttttatagatacatatgcattaaaagttatttttc |
2202675 |
T |
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| Q |
198 |
taaacctcattacaagtatggctagcagaaattaatgtctcttttgctacttctataaacatattgtggtttccattcctaatttgacttttaatacttg |
297 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||| |||||||||||| |
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| T |
2202676 |
taaacctcattacaagtatggcttgcagaaattaatgtctcttttgctacttctgtagacatattgtggtttctattccttatttgatttttaatacttg |
2202775 |
T |
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| Q |
298 |
ctacagggtgaaagtcagagttttgatttacctgtaaagaaaagaagcgatatttgtacaataatgtatactagcggaactactggtgaccccaagggag |
397 |
Q |
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| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2202776 |
ccacagggtaaaagtcatagttttgatttacctgtaaagaaaagaagcgatatctgtacaataatgtatactagcggaactactggtgaccccaaggggg |
2202875 |
T |
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| Q |
398 |
tattgatatccaat |
411 |
Q |
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|||||||||||||| |
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| T |
2202876 |
tattgatatccaat |
2202889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 410
Target Start/End: Complemental strand, 41931437 - 41931345
Alignment:
| Q |
318 |
ttttgatttacctgtaaagaaaagaagcgatatttgtacaataatgtatactagcggaactactggtgaccccaagggagtattgatatccaa |
410 |
Q |
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||||||| | |||||||| || | |||||| || |||||||||||||| || || ||||| || ||||| ||||||||||||||||||||||| |
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| T |
41931437 |
ttttgatcttcctgtaaaaaagaaaagcgacatatgtacaataatgtacacaagtggaacaaccggtgatcccaagggagtattgatatccaa |
41931345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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