View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1304_low_58 (Length: 419)
Name: NF1304_low_58
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_58 |
 | |
|
| [»] scaffold0219 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 356
Target Start/End: Original strand, 52550168 - 52550509
Alignment:
| Q |
15 |
agttaaggttttaagtgttgtctttttgtttagtatgcattaagtctaataattttctggtagagacatgttatctaaaccattccaacaacagtgtgct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52550168 |
agttaaggttttaagtgttgtctttttgtttagtatgcattaagtctaataattttctggtagagacatgttatctaaaccattccaacaacagtgtgct |
52550267 |
T |
|
| Q |
115 |
gaaaccatatgatgcagacactcttgtttccattaagattaatttagattttattagtttacaagtttccttgagtcatctccaagattttaatctgctg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
52550268 |
gaaaccatatgatgcagacactcttgtttccattaagattaatttagattttattagtttacaagtttctttgagtcttctccaagattttaatctgctg |
52550367 |
T |
|
| Q |
215 |
cataatcagtcggtcgatttcctttgtttgagtacaaaatagaacagtttagttttgtttcatgctcaaacttgtattaaaatttaaaaatttagactaa |
314 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
52550368 |
cataatcagttggtcgatttcctttgcttgagtacagaatagaagagttattttttgtttcatgctcaaacttgtattgaaatttaaaaaattagactaa |
52550467 |
T |
|
| Q |
315 |
ggtttcatcaggatttgtattatagaaaaaaggagatgtctt |
356 |
Q |
| |
|
|| |||| ||| |||||||||||||||||| || |||||||| |
|
|
| T |
52550468 |
ggcttcagcagaatttgtattatagaaaaatggtgatgtctt |
52550509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 52550524 - 52550564
Alignment:
| Q |
354 |
cttacaagcatctcctatatgtaattttttcctttctttct |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
52550524 |
cttacaagcatctcctatatgtaatttttttccttctttct |
52550564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 80 - 357
Target Start/End: Complemental strand, 50672358 - 50672083
Alignment:
| Q |
80 |
acatgttatctaaaccattccaacaacagtgtgctgaaaccatatgatgcagacactcttgtttccattaagattaatttagattttattagtttacaag |
179 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50672358 |
acatgttatctaaaccattccaacaacaatgtgctgaaaccat--gatgcagacactcttgtttccattaagattaatttagattttattagtttacaag |
50672261 |
T |
|
| Q |
180 |
tttccttgagtcatctccaagattttaatctgctgcataatcagtcggtcgatttcctttgtttgagtacaaaatagaacagtttagttttgtttcatgc |
279 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
50672260 |
tttctttgagtcatctccaagattttaatttgctgcataatcagtcggtcgatttcctttgcttgagtacagaatagaagagtttagttttgtttcatgt |
50672161 |
T |
|
| Q |
280 |
tcaaacttgtattaaaatttaaaaatttagactaaggtttcatcaggatttgtattatagaaaaaaggagatgtctta |
357 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50672160 |
tgaaacttgtattaaaatttaaaaatttagactaaggtttcatcaggatttgtattatagaaaaaagaagatgtctta |
50672083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 197 - 357
Target Start/End: Complemental strand, 23591272 - 23591112
Alignment:
| Q |
197 |
caagattttaatctgctgcataatcagtcggtcgatttcctttgtttgagtacaaaatagaacagtttagttttgtttcatgctcaaacttgtattaaaa |
296 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23591272 |
caagattttaatgtcctgcataatcaatcggtcgatttcctttgcttgagtacagaatagaagagtttagttttgtttcatgctcaaacttgtattaaaa |
23591173 |
T |
|
| Q |
297 |
tttaaaaatttagactaaggtttcatcaggatttgtattatagaaaaaaggagatgtctta |
357 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23591172 |
tttaaaaatttagactaaggtttcatcagaatttgtattatagaaaaaaggagatgtctta |
23591112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 23591092 - 23591036
Alignment:
| Q |
354 |
cttacaagcatctcctatatgtaattttttcctttctttctgaatctgcagaataat |
410 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
23591092 |
cttacaagcatctctaatatgtaattttttcctttctttctgaatttgcaggataat |
23591036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 234 - 357
Target Start/End: Complemental strand, 23002 - 22879
Alignment:
| Q |
234 |
tcctttgtttgagtacaaaatagaacagtttagttttgtttcatgctcaaacttgtattaaaatttaaaaatttagactaaggtttcatcaggatttgta |
333 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
23002 |
tcctttgcttgagtacataatagaagagtttagttttgtttcatgctcaaacttgtattaaaatataaaaatttagactaaggtttcattaggatttgta |
22903 |
T |
|
| Q |
334 |
ttatagaaaaaaggagatgtctta |
357 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
22902 |
ttatataaaaaaggagatgtctta |
22879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 22859 - 22815
Alignment:
| Q |
354 |
cttacaagcatctcctatatgtaattttttcctttctttctgaat |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22859 |
cttacaagcatctcctatatgtaattttttcctttctttctgaat |
22815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 70 - 344
Target Start/End: Complemental strand, 7541081 - 7540803
Alignment:
| Q |
70 |
tctggtagagacatgttatctaaaccattccaa-caacagtgtgctgaaaccatatgatgcagacactcttgtttccattaagattaatttagattttat |
168 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| || ||||||||||||||| |||| || || | |||||||||||||||| ||||||||||||| |
|
|
| T |
7541081 |
tctggtagagacatgttatctaaaccctgccaaacattggtgtgctgaaaccat--gatggaggcatttctgtttccattaagattgatttagattttat |
7540984 |
T |
|
| Q |
169 |
tagtttacaagtttccttgagtcatctccaagattttaatctgctgcataatcagtcggtcgatttcctttgtttgagtacaaaatagaacagttta-gt |
267 |
Q |
| |
|
||| ||||||||||| |||||| | ||||| ||| |||| ||||||||||||||| ||| ||||||||||| |||||||||||||| | |||||| | |
|
|
| T |
7540983 |
tagcttacaagtttctttgagttttatccaaaattataatttgctgcataatcagttggtggatttcctttgcttgagtacaaaatatgaaagtttatgg |
7540884 |
T |
|
| Q |
268 |
tttgtttcatgctcaaa-cttgtattaaaattt---aaaaatttagactaaggtttcatcaggatttgtattatagaaaaa |
344 |
Q |
| |
|
||||||||||||||||| || |||| |||||| ||||||||||| | | ||||| ||||||| |||||||||||||| |
|
|
| T |
7540883 |
tttgtttcatgctcaaagtttctattgaaatttagaaaaaatttagagtcatgtttctgcaggattggtattatagaaaaa |
7540803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 14702272 - 14702155
Alignment:
| Q |
123 |
atgatgcagacactcttgtttccattaagattaatttagattttatt-----agtttacaagtttcctt-gagtcatctccaagattttaatctgctgca |
216 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||| |||||||||||| |||||| ||||||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
14702272 |
atgatgcagtcactcatgtttccattatgattaacttagattttattttattagtttataagtttcttttgagtcttctccaagattttaatctgctgca |
14702173 |
T |
|
| Q |
217 |
taatcagtcggtcgattt |
234 |
Q |
| |
|
||||| || ||| ||||| |
|
|
| T |
14702172 |
taatcggttggttgattt |
14702155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 12233803 - 12233744
Alignment:
| Q |
286 |
ttgtattaaaatttaaaaat-ttagactaaggtttcatcaggatttgtattatagaaaaa |
344 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
12233803 |
ttgtattgaaatttaaaaatattagactaaggtttcagcaggattagtattatagaaaaa |
12233744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University