View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_59 (Length: 405)
Name: NF1304_low_59
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 28 - 349
Target Start/End: Original strand, 43850815 - 43851136
Alignment:
| Q |
28 |
cacttggctccttttatagtgtcctgctgcaaggtaacaaatatatcagaaaatggttttgctccaaagccaatccataaacgttagaataataaaatct |
127 |
Q |
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| T |
43850815 |
cacttggctccttttatagtgtcctgctgcaaggtaacaaatatatcagaaaatggttttgctccaaagccaatccataaacgttagaataataaaatct |
43850914 |
T |
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| Q |
128 |
agaccctgtgtgcatgcgcgcgcatgcccatcactctttaatttcaattcacaaaccacataacaagctattatttacattcaagttcaatcgaagaact |
227 |
Q |
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| T |
43850915 |
agaccctgtgtgcatgcgcgcgcatgcccatcactctttaatttcaaatcacaaaccacataacaagctattatttacattcaagttcaatcgaagaacg |
43851014 |
T |
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| Q |
228 |
ttaagacatagatcaccgtacaaactgcaggagatccgtaaatcataaaggttaacctactcattagcaagggtagtaaatggttactcttcccttttct |
327 |
Q |
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||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43851015 |
ctaagacatagatcaccgtacaaactccaggagattcataaatcataaaggttaacctactcattagcaagggtagtaaatggttactcttcccttttct |
43851114 |
T |
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| Q |
328 |
ttagagaaatcaactacagaca |
349 |
Q |
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| T |
43851115 |
tcagagaaatcaactacagaca |
43851136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 24012625 - 24012783
Alignment:
| Q |
114 |
gaataataaaatctagaccctgtgtgcatgcgcgcgcatgcccatcactctttaatttcaattcacaaaccacataacaagctattat-ttacattcaag |
212 |
Q |
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| T |
24012625 |
gaataataaaatctagaccctgtgtacattc------atactcatcactcttcaatctcaaaacgcaaaccacagaacaagctgtaaaattacattcaag |
24012718 |
T |
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| Q |
213 |
ttcaatcgaagaactttaagacatagatcaccgtacaaactgcaggagatccgtaaatcataaag |
277 |
Q |
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||||||| | ||||| ||| |||||||| ||| |||||||| || |||||| |||||||||||| |
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| T |
24012719 |
ttcaatctatgaactctaaaacatagatgaccatacaaactccaagagatcgataaatcataaag |
24012783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 43851131 - 43851167
Alignment:
| Q |
359 |
cagacacagaaccagattacaagcatcaatagtataa |
395 |
Q |
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| T |
43851131 |
cagacacagaaccagattacaagcatcaatagtataa |
43851167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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