View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1304_low_6 (Length: 696)

Name: NF1304_low_6
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1304_low_6
NF1304_low_6
[»] chr7 (37 HSPs)
chr7 (8-350)||(38321027-38321369)
chr7 (373-696)||(38320713-38321035)
chr7 (583-696)||(41442605-41442718)
chr7 (583-677)||(35488666-35488759)
chr7 (583-696)||(23548121-23548234)
chr7 (583-696)||(40495634-40495747)
chr7 (583-696)||(43791456-43791569)
chr7 (583-696)||(45181759-45181871)
chr7 (176-347)||(13108169-13108340)
chr7 (583-658)||(39342162-39342237)
chr7 (234-345)||(23980154-23980265)
chr7 (583-696)||(36328330-36328443)
chr7 (586-658)||(2411784-2411856)
chr7 (177-345)||(5811162-5811331)
chr7 (583-658)||(14602773-14602848)
chr7 (583-658)||(28538679-28538754)
chr7 (583-658)||(35456277-35456352)
chr7 (583-658)||(45984806-45984881)
chr7 (583-658)||(45989166-45989241)
chr7 (583-696)||(13814504-13814617)
chr7 (583-696)||(25188796-25188909)
chr7 (583-635)||(26161989-26162042)
chr7 (607-696)||(46699774-46699862)
chr7 (587-658)||(40496191-40496262)
chr7 (583-658)||(42816995-42817070)
chr7 (583-632)||(37460472-37460522)
chr7 (583-635)||(14790562-14790615)
chr7 (239-355)||(31148303-31148419)
chr7 (239-311)||(46475081-46475153)
chr7 (234-349)||(30887719-30887834)
chr7 (239-350)||(36346627-36346737)
chr7 (33-132)||(1292071-1292167)
chr7 (583-635)||(29639065-29639119)
chr7 (241-347)||(42221027-42221133)
chr7 (237-330)||(20086688-20086781)
chr7 (239-347)||(28307557-28307665)
chr7 (587-658)||(30587436-30587507)
[»] chr4 (33 HSPs)
chr4 (178-347)||(51038784-51038956)
chr4 (583-696)||(30303553-30303666)
chr4 (584-696)||(47108653-47108765)
chr4 (583-658)||(40547770-40547845)
chr4 (583-696)||(24705763-24705876)
chr4 (583-696)||(42775782-42775895)
chr4 (583-696)||(54566607-54566720)
chr4 (583-658)||(2126309-2126384)
chr4 (583-696)||(46242624-46242737)
chr4 (583-696)||(17727844-17727958)
chr4 (583-658)||(35470595-35470670)
chr4 (178-355)||(46192372-46192551)
chr4 (583-668)||(41139933-41140018)
chr4 (583-635)||(3803719-3803772)
chr4 (583-635)||(10633186-10633239)
chr4 (584-692)||(42776522-42776630)
chr4 (583-674)||(19461268-19461359)
chr4 (239-347)||(52191262-52191370)
chr4 (583-632)||(21012441-21012491)
chr4 (583-656)||(21782446-21782519)
chr4 (607-693)||(26534924-26535009)
chr4 (583-632)||(31474007-31474057)
chr4 (241-355)||(35544925-35545039)
chr4 (587-685)||(38060183-38060280)
chr4 (583-658)||(27284222-27284297)
chr4 (583-658)||(31948044-31948119)
chr4 (37-93)||(1237528-1237586)
chr4 (583-653)||(16516644-16516714)
chr4 (39-100)||(2694250-2694312)
chr4 (225-311)||(54849845-54849931)
chr4 (584-691)||(5579654-5579761)
chr4 (239-347)||(49243836-49243944)
chr4 (583-658)||(56118171-56118246)
[»] chr2 (39 HSPs)
chr2 (583-696)||(32839190-32839303)
chr2 (582-696)||(7167189-7167303)
chr2 (582-691)||(7611420-7611529)
chr2 (583-658)||(35047203-35047278)
chr2 (583-658)||(769504-769579)
chr2 (583-658)||(33188791-33188866)
chr2 (583-658)||(39630698-39630773)
chr2 (583-696)||(3092680-3092793)
chr2 (607-677)||(30265784-30265853)
chr2 (583-658)||(1583334-1583409)
chr2 (583-658)||(7309438-7309513)
chr2 (587-658)||(44256106-44256177)
chr2 (583-696)||(14306366-14306479)
chr2 (583-696)||(30698715-30698828)
chr2 (583-635)||(10480274-10480327)
chr2 (583-663)||(31703925-31704005)
chr2 (250-347)||(36315582-36315679)
chr2 (583-658)||(13018217-13018292)
chr2 (583-658)||(19231019-19231093)
chr2 (637-696)||(7227616-7227675)
chr2 (583-668)||(2925113-2925198)
chr2 (583-692)||(8735967-8736076)
chr2 (583-632)||(11794053-11794103)
chr2 (583-656)||(28021708-28021781)
chr2 (174-347)||(33732590-33732764)
chr2 (37-99)||(744900-744964)
chr2 (582-658)||(11141777-11141853)
chr2 (180-263)||(13535749-13535834)
chr2 (239-311)||(24137154-24137226)
chr2 (239-347)||(44958134-44958242)
chr2 (598-668)||(2274327-2274396)
chr2 (583-628)||(17906143-17906189)
chr2 (582-631)||(21504948-21504998)
chr2 (226-304)||(41188833-41188911)
chr2 (583-631)||(8736510-8736559)
chr2 (250-347)||(37914309-37914406)
chr2 (583-634)||(7684600-7684652)
chr2 (584-635)||(19193746-19193798)
chr2 (583-630)||(41585196-41585244)
[»] chr1 (31 HSPs)
chr1 (598-685)||(10166940-10167027)
chr1 (583-696)||(37446885-37446998)
chr1 (584-692)||(44571116-44571224)
chr1 (583-696)||(37036506-37036619)
chr1 (583-696)||(37447428-37447541)
chr1 (583-658)||(946852-946927)
chr1 (583-692)||(39887504-39887613)
chr1 (583-658)||(15467488-15467563)
chr1 (180-350)||(19258674-19258845)
chr1 (583-696)||(35499483-35499596)
chr1 (583-635)||(47541853-47541906)
chr1 (583-696)||(6470230-6470344)
chr1 (586-633)||(26500947-26500995)
chr1 (583-633)||(47165077-47165128)
chr1 (583-656)||(220627-220700)
chr1 (583-692)||(8225211-8225320)
chr1 (239-313)||(8848915-8848989)
chr1 (583-631)||(24273086-24273135)
chr1 (176-347)||(34307135-34307308)
chr1 (587-669)||(4663772-4663853)
chr1 (583-658)||(28632128-28632203)
chr1 (598-696)||(32647727-32647825)
chr1 (583-628)||(23969441-23969487)
chr1 (241-329)||(9642929-9643018)
chr1 (583-647)||(37447973-37448037)
chr1 (607-696)||(50472150-50472238)
chr1 (37-77)||(10382179-10382219)
chr1 (583-658)||(21267348-21267423)
chr1 (583-658)||(32128556-32128631)
chr1 (275-355)||(39249961-39250041)
chr1 (583-658)||(41480956-41481031)
[»] chr8 (38 HSPs)
chr8 (583-696)||(24051706-24051819)
chr8 (583-696)||(28324225-28324338)
chr8 (239-347)||(42668844-42668951)
chr8 (583-696)||(24045398-24045511)
chr8 (583-696)||(10593507-10593619)
chr8 (583-658)||(29611795-29611870)
chr8 (583-658)||(31980048-31980123)
chr8 (587-658)||(40733641-40733712)
chr8 (583-658)||(44346223-44346298)
chr8 (280-350)||(31550-31620)
chr8 (583-676)||(9983102-9983195)
chr8 (583-658)||(14710-14785)
chr8 (583-658)||(29256915-29256990)
chr8 (583-658)||(31976667-31976742)
chr8 (583-658)||(33376831-33376906)
chr8 (583-658)||(35978594-35978669)
chr8 (583-658)||(43185452-43185527)
chr8 (583-694)||(44890034-44890145)
chr8 (583-656)||(26519984-26520057)
chr8 (583-696)||(33986431-33986544)
chr8 (583-635)||(36103255-36103308)
chr8 (583-658)||(29482343-29482418)
chr8 (583-668)||(8049639-8049724)
chr8 (178-346)||(33726033-33726203)
chr8 (583-696)||(36624812-36624925)
chr8 (582-658)||(13145056-13145132)
chr8 (583-635)||(30444808-30444861)
chr8 (275-355)||(36189229-36189309)
chr8 (37-92)||(17443764-17443819)
chr8 (589-635)||(23011888-23011935)
chr8 (36-76)||(36067980-36068022)
chr8 (587-696)||(1087852-1087961)
chr8 (33-99)||(4438545-4438613)
chr8 (587-628)||(29317199-29317240)
chr8 (598-633)||(7079785-7079821)
chr8 (583-642)||(7669123-7669183)
chr8 (239-347)||(30432360-30432468)
chr8 (637-685)||(35404342-35404390)
[»] chr5 (35 HSPs)
chr5 (585-696)||(37241163-37241274)
chr5 (583-696)||(22303390-22303503)
chr5 (239-346)||(17225341-17225446)
chr5 (583-658)||(32249651-32249726)
chr5 (582-696)||(10315083-10315197)
chr5 (586-677)||(32317127-32317217)
chr5 (583-635)||(20320531-20320584)
chr5 (583-658)||(12480372-12480447)
chr5 (581-692)||(28489900-28490011)
chr5 (583-658)||(41761746-41761821)
chr5 (584-658)||(22304655-22304729)
chr5 (583-668)||(6771825-6771910)
chr5 (583-658)||(28490378-28490454)
chr5 (583-635)||(12064320-12064373)
chr5 (637-694)||(18442938-18442995)
chr5 (583-635)||(25935153-25935206)
chr5 (585-696)||(15270421-15270532)
chr5 (583-658)||(17541886-17541961)
chr5 (582-696)||(17492690-17492804)
chr5 (583-633)||(35111707-35111758)
chr5 (583-656)||(33995446-33995519)
chr5 (583-635)||(19533769-19533822)
chr5 (583-658)||(927773-927848)
chr5 (275-347)||(14831565-14831637)
chr5 (37-80)||(5856401-5856444)
chr5 (583-685)||(11409622-11409723)
chr5 (583-692)||(22304736-22304845)
chr5 (583-631)||(13390964-13391013)
chr5 (583-658)||(15580000-15580076)
chr5 (234-347)||(40887999-40888112)
chr5 (239-355)||(1815678-1815794)
chr5 (240-355)||(12164264-12164382)
chr5 (34-99)||(14001111-14001178)
chr5 (275-347)||(33404534-33404606)
chr5 (583-658)||(37091059-37091134)
[»] chr3 (47 HSPs)
chr3 (182-347)||(29820304-29820469)
chr3 (583-696)||(37054830-37054943)
chr3 (607-696)||(30766987-30767075)
chr3 (583-692)||(2105168-2105277)
chr3 (583-696)||(42005475-42005588)
chr3 (583-696)||(50168193-50168306)
chr3 (585-668)||(34396148-34396231)
chr3 (239-346)||(53638157-53638264)
chr3 (583-696)||(28181800-28181913)
chr3 (583-696)||(47767860-47767973)
chr3 (583-635)||(8762281-8762334)
chr3 (583-696)||(26547412-26547524)
chr3 (583-658)||(34089048-34089123)
chr3 (583-658)||(36397513-36397588)
chr3 (587-658)||(48948054-48948125)
chr3 (583-658)||(53469953-53470028)
chr3 (605-696)||(13339116-13339206)
chr3 (587-696)||(645741-645850)
chr3 (583-696)||(7302827-7302940)
chr3 (583-692)||(24241713-24241822)
chr3 (583-668)||(43863488-43863573)
chr3 (583-635)||(19475971-19476024)
chr3 (584-668)||(48824637-48824721)
chr3 (583-658)||(671190-671265)
chr3 (583-658)||(21731391-21731466)
chr3 (275-347)||(38231314-38231386)
chr3 (33-80)||(16738229-16738275)
chr3 (583-696)||(21307113-21307226)
chr3 (607-677)||(46636302-46636371)
chr3 (583-696)||(52527444-52527557)
chr3 (583-635)||(33871766-33871819)
chr3 (583-635)||(47714431-47714484)
chr3 (610-692)||(6836590-6836671)
chr3 (583-692)||(7976989-7977098)
chr3 (583-668)||(38506486-38506571)
chr3 (583-628)||(54761428-54761474)
chr3 (610-696)||(55460700-55460785)
chr3 (583-675)||(44288026-44288118)
chr3 (607-692)||(47283827-47283911)
chr3 (275-347)||(22894701-22894773)
chr3 (610-670)||(25547018-25547077)
chr3 (587-658)||(28092136-28092206)
chr3 (275-347)||(29460681-29460753)
chr3 (275-347)||(29471533-29471605)
chr3 (583-658)||(35279472-35279547)
chr3 (275-347)||(36370436-36370508)
chr3 (239-355)||(46112006-46112122)
[»] chr6 (16 HSPs)
chr6 (179-347)||(14022955-14023124)
chr6 (583-696)||(15615922-15616035)
chr6 (583-635)||(34364899-34364952)
chr6 (583-658)||(8475601-8475676)
chr6 (176-350)||(24208462-24208637)
chr6 (583-635)||(34244845-34244898)
chr6 (583-658)||(1368948-1369023)
chr6 (582-696)||(31413294-31413408)
chr6 (583-656)||(10105480-10105553)
chr6 (583-632)||(13487433-13487483)
chr6 (582-679)||(15833058-15833155)
chr6 (583-659)||(1195775-1195851)
chr6 (583-635)||(29889298-29889352)
chr6 (583-647)||(724813-724877)
chr6 (37-99)||(8866861-8866925)
chr6 (275-347)||(3987003-3987075)
[»] scaffold0400 (1 HSPs)
scaffold0400 (583-696)||(4022-4135)
[»] scaffold0365 (1 HSPs)
scaffold0365 (583-696)||(4666-4779)
[»] scaffold0337 (1 HSPs)
scaffold0337 (607-696)||(15964-16052)
[»] scaffold0301 (1 HSPs)
scaffold0301 (598-658)||(7624-7684)
[»] scaffold0169 (1 HSPs)
scaffold0169 (583-696)||(4453-4566)
[»] scaffold0062 (1 HSPs)
scaffold0062 (237-347)||(6739-6849)
[»] scaffold0047 (1 HSPs)
scaffold0047 (583-692)||(49838-49947)
[»] scaffold0129 (1 HSPs)
scaffold0129 (607-696)||(19334-19422)
[»] scaffold0027 (1 HSPs)
scaffold0027 (583-635)||(11324-11377)
[»] scaffold0417 (1 HSPs)
scaffold0417 (584-631)||(11499-11547)
[»] scaffold0318 (1 HSPs)
scaffold0318 (583-658)||(3329-3404)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 38321369 - 38321027
Alignment:
Q  8 ccaagaatatgacaactatatttttaaaaaacaatatagcaaatataatatattcttatctttttaaatgacaacatcaatataagattcttgattcata 107  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321369 ccaacaatatgacaaatatatttttaaaaaacaatatagcaaatataatatattcttatctttttaaatgacaacatcaatataagattcttgattcata 38321270  T
Q  108 aataaatttgtttaagggtataattagaaacgaaaatgtccgtccaaaatcataaataatctttatataaggaaaaagataggtagacaccatttcttaa 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321269 aataaatttgtttaagggtataattagaaatgaaaatgtccgtccaaaatcataaataatctttatataaggaaaaagataggtagacaccatttcttaa 38321170  T
Q  208 gtacctctcatgataccccatgtggcagagatattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatc 307  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||    
T  38321169 gtacctctcatgataccccatgtggcagggatattttagtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtc 38321070  T
Q  308 acaattgtaagtgggtgttaaagtgcgtatgccacctaagatg 350  Q
    ||||||||| |||||||||||| || |||||||||||||||||    
T  38321069 acaattgtatgtgggtgttaaaatgtgtatgccacctaagatg 38321027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 373 - 696
Target Start/End: Complemental strand, 38321035 - 38320713
Alignment:
Q  373 cctaagatggttcatgtataaagactcttatataaagtatagattggttactttgattctttaattgacaaaccatggacactttattctttcctgttag 472  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321035 cctaagatggttaatgtataaggactcttatataaagtatatattggttactttgattctttaattgacaaaccatggacactttattctttcctgttag 38320936  T
Q  473 gggccaaaatgtcttattatttgaaacttaagatacgaatatgtctgacattcaaaatttaagggtttaaaatgaaaacnnnnnnngttcatttaatccc 572  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |       |||||||| |||||    
T  38320935 gggccaaaatgtcttattatttgaaacttaagatacgaaaatgtctgacattcaaaatttaagggtttaaaatgaaaccaaaaaaagttcatttgatccc 38320836  T
Q  573 ttacattataagtgtgtttggatgtggtaattgaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaa 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38320835 ttacattataagtgtgtttggatgtggtaattgaaaattttaaagaatttaaaattctaggca-attcaaatgatacaattaaattgtcttcatttttaa 38320737  T
Q  673 atattattatttgtatggagtaat 696  Q
    ||||||||||||||||||||||||    
T  38320736 atattattatttgtatggagtaat 38320713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 41442605 - 41442718
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||  ||||||||| ||||||| ||||||||| ||||||||| | ||||||||||| ||||||||||| |||||||  |||||||||||     
T  41442605 agtgtgtttggattgggtaattgagaaattttgaagaatttagaattctaggta-attcaaatgattcaattaaattgccttcattcctaaatattattg 41442703  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  41442704 tttggatggagtaat 41442718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 583 - 677
Target Start/End: Complemental strand, 35488759 - 35488666
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatatt 677  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| || || |||| ||||||| ||||||| |||||||| |||| |||||||    
T  35488759 agtgtgtttggatgatgtaattgaaaattttaaagaatttaaaatttta-gcctatttaaatgattcaattaatttgtcttctttttcaaatatt 35488666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 23548121 - 23548234
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||| | ||| ||||||| ||||||||||   ||||||| |||||| | ||     
T  23548121 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctagg-aaatttaaatgattcaattaaattactttcatttctaaatacttttg 23548219  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  23548220 tttggatggagtaat 23548234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 40495747 - 40495634
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||| ||||||| ||||||||| |||| |||| | ||||||||||| ||||| |||||| |||||| |||||| |||||     
T  40495747 agtgtgtttggatgaggtaattgagaaattttgaagaatttagaattataggga-attcaaatgattcaattcaattgttttcattcttaaatgttattg 40495649  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||| ||||||    
T  40495648 tttggatgaagtaat 40495634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 43791569 - 43791456
Alignment:
Q  583 agtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| |||||||| |||||||||||||||||| |||||| |||| ||| ||||||| |||||||||| | ||||||| | |||| | ||     
T  43791569 agtgtgtttggatgaggtaattggaaaattttaaagaatttagaattcttggca-atttaaatgattcaattaaattattttcatttctcaatacttttg 43791471  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  43791470 tttggatggagtaat 43791456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 45181759 - 45181871
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattat 682  Q
    |||||||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||| |||| || ||||||| ||| |||||||| ||||| || || |    
T  45181759 agtgtgtttggatgaggtaattgaaaattttagagagtttagaattctaggca-attgaaattattcaattaatttgccttcatttctaaatctttttgt 45181857  T
Q  683 ttgtatggagtaat 696  Q
    ||| || |||||||    
T  45181858 ttggatagagtaat 45181871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 176 - 347
Target Start/End: Complemental strand, 13108340 - 13108169
Alignment:
Q  176 aaggaaaaagataggtagacaccatttcttaagtacctctcatg-ataccccatgtggcagagatattttagtactttcacatcacaccatcacctcctc 274  Q
    ||||||||||||||||||||||| ||| |||   |||| ||||| | ||| ||||||  || | |||||||||| |||||||||||| | ||||| |||     
T  13108340 aaggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacc-cctt 13108242  T
Q  275 tcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    |||| |||||| |||| ||||||| ||||| |||||| |||  |||||||| |||| | ||||||| ||||||    
T  13108241 tcatctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaag 13108169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 39342162 - 39342237
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  39342162 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 39342237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 234 - 345
Target Start/End: Complemental strand, 23980265 - 23980154
Alignment:
Q  234 agagatattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgc 333  Q
    |||| |||||||||| |||||||||||| | ||||| | | |||| |||||| |||||||||||| ||||| |||||| |||  |||||||| |||| |     
T  23980265 agaggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggt 23980166  T
Q  334 gtatgccaccta 345  Q
    ||||||||||||    
T  23980165 gtatgccaccta 23980154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 36328330 - 36328443
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||| |||||||||| |||||| ||||||||||| ||| ||||||| ||||||||||   ||||||| | |||| | ||     
T  36328330 agtgtgtttggatgaggtaattgagaaattttaaaaaatttagaattctaggca-atttaaatgattcaattaaattactttcatttctcaatacttttg 36328428  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  36328429 tttggatggagtaat 36328443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 586 - 658
Target Start/End: Complemental strand, 2411856 - 2411784
Alignment:
Q  586 gtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  2411856 gtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 2411784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 345
Target Start/End: Original strand, 5811162 - 5811331
Alignment:
Q  177 aggaaaaagataggtagacaccatttcttaagtacctctcatg-ataccccatgtggcagagatattttagtactttcacatcacaccatcacctcctct 275  Q
    |||||||||||||||||||||| ||| |||   ||||| |||| | ||| ||||||  || | |||||||||| |||||||||||| | ||||| | | |    
T  5811162 aggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccctttt 5811261  T
Q  276 catatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccaccta 345  Q
    ||| |||||| |||||||||||| ||||| |||||| |||  |||||||  ||||   ||||||||||||    
T  5811262 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccaccta 5811331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 14602773 - 14602848
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaa-ttttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| |||||||||||| |||||||||||||| ||||||||||| ||| |||| || ||||||||||    
T  14602773 agtgtgtttggatgaggtaattgaaaaattttaaagaatttagaattctaggca-atttaaataattcaattaaatt 14602848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 28538679 - 28538754
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||| |||||| ||| ||||||| ||||||||||    
T  28538679 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattttaggca-atttaaatgattcaattaaatt 28538754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 35456352 - 35456277
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaa-ttttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| |||||||||||| |||||||||||||| ||||||||||| ||| |||| || ||||||||||    
T  35456352 agtgtgtttggatgaggtaattgaaaatttttaaagaatttagaattctaggca-atttaaataattcaattaaatt 35456277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 45984881 - 45984806
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| |||||| || ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  45984881 agtgtgtttggatggggtaatagagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 45984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 45989241 - 45989166
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| |||||| || ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  45989241 agtgtgtttggatggggtaatagagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 45989166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 13814504 - 13814617
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||| ||  ||||||||| ||||||| ||||||||| ||||||||| | ||||||||||| ||||| |||||  |||||| |||||| |||||     
T  13814504 agtgtgtttgaatagggtaattgagaaattttgaagaatttagaattctaggga-attcaaatgattcaattcaattgctttcattcttaaatgttattg 13814602  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||| ||||||    
T  13814603 tttggatgaagtaat 13814617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 25188796 - 25188909
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaatttta-aagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||| |||||||||||||||||||  ||||  || |||||| |||||||| || ||| ||||||  ||||||||||| ||| ||||||||||||| ||     
T  25188796 agtgtatttggatgtggtaattgaatttttttgaataatttagaattctagaca-atttaaatgactcaattaaattgccttaatttttaaatatttttg 25188894  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  25188895 tttggatggagtaat 25188909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 26161989 - 26162042
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  26161989 agtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctaggca 26162042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 607 - 696
Target Start/End: Original strand, 46699774 - 46699862
Alignment:
Q  607 aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggagtaat 696  Q
    ||||||| ||||||||| |||| || ||| |||||||| || ||||||||||  |||||||| ||||||||||| |||| ||||||||||    
T  46699774 aaattttgaagaatttagaattttatgca-attcaaattattcaattaaattaccttcatttctaaatattattgtttggatggagtaat 46699862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 587 - 658
Target Start/End: Complemental strand, 40496262 - 40496191
Alignment:
Q  587 tgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||| ||||||| | ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  40496262 tgtttggatgaggtaattaagaaattttaaagaatttataattctaggca-atttaaatgattcaattaaatt 40496191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 42817070 - 42816995
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||| ||||    
T  42817070 agtgtgttaggatgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattgaatt 42816995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 632
Target Start/End: Original strand, 37460472 - 37460522
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaa-ttttaaagaatttaaaattctag 632  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  37460472 agtgtatttggatgaggtaattgaaaatttttaaagaatttaaaattctag 37460522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 14790615 - 14790562
Alignment:
Q  583 agtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| |||||||| |||||||||||||||||| ||| |||||||    
T  14790615 agtgtgtttggatgaggtaattggaaaattttaaagaatttagaatcctaggca 14790562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 31148419 - 31148303
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatg 338  Q
    |||||||||| ||| |||||| | |||||||   | |||| |||||| |||||||||||| ||  | |||||| |||  |||||||| |||| | |||||    
T  31148419 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 31148320  T
Q  339 ccacctaagatgattca 355  Q
    |||||||||||| ||||    
T  31148319 ccacctaagatggttca 31148303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 46475153 - 46475081
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaa 311  Q
    |||||||||| |||||||||||| | ||||| | | |||| |||||| ||||||||||||| |||| ||||||    
T  46475153 tattttagtaatttcacatcacatcgtcaccccttttcatctcttctttcaatgtttttgttacatgtcacaa 46475081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 30887834 - 30887719
Alignment:
Q  234 agagatattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgc 333  Q
    |||| ||||| |||| ||| |||||| | |||||||   | |||| |||||  ||||||||||||  || | |||||| |||| |||||||| ||||||     
T  30887834 agaggtatttaagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgt 30887735  T
Q  334 gtatgccacctaagat 349  Q
    ||||||||||||||||    
T  30887734 gtatgccacctaagat 30887719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 350
Target Start/End: Original strand, 36346627 - 36346737
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatg 338  Q
    |||||||||| ||| |||||| | ||||||||  | |||| |||||| |||||||||||| ||| | |||||| |||   ||||||| |||| | |||||    
T  36346627 tattttagtaattttacatcatatcatcacctttt-tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatg 36346725  T
Q  339 ccacctaagatg 350  Q
    ||||||||||||    
T  36346726 ccacctaagatg 36346737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 1292071 - 1292167
Alignment:
Q  33 aaaaaacaatatagcaaatataatata--ttcttatctttttaaatgacaacatcaatataagattcttgattcataaataaatttgtttaagggtataa 130  Q
    ||||||||| |||| ||||||||||||  ||||||||||||| ||||||| || |||||||  ||||||     |||| |||||||||| ||| ||||||    
T  1292071 aaaaaacaagatagaaaatataatataaattcttatcttttttaatgacaccaacaatatagcattctt-----ataagtaaatttgttaaagagtataa 1292165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 29639065 - 29639119
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaa-tttaaaattctaggca 635  Q
    |||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||    
T  29639065 agtgtgtttggatgaggtaatttgaaaattttaaagaatttttaaattctaggca 29639119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 42221027 - 42221133
Alignment:
Q  241 ttttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgcc 340  Q
    |||||||| ||| |||||| | ||||||| | | | ||||||||| |||||||||||| ||| | |||||| |||  |||||||| |||  | |||||||    
T  42221027 ttttagtaatttaacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgcc 42221126  T
Q  341 acctaag 347  Q
    |||||||    
T  42221127 acctaag 42221133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 20086688 - 20086781
Alignment:
Q  237 gatattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaag 330  Q
    |||||||||||| |||||||||||| ||||||| | | | || |||||| | |||||||||| || || || ||| |||| |||||||| ||||    
T  20086688 gatattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaag 20086781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 347
Target Start/End: Original strand, 28307557 - 28307665
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatg 338  Q
    |||||||||| ||| |||||| | |||||||   | |||| |||||| |||||||||||| ||| | || ||| |||  |||||||| |||| | |||||    
T  28307557 tattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatg 28307656  T
Q  339 ccacctaag 347  Q
    |||||||||    
T  28307657 ccacctaag 28307665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 587 - 658
Target Start/End: Original strand, 30587436 - 30587507
Alignment:
Q  587 tgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||| | |||||||| ||||||||| |||||||| ||||||||||| ||| ||| ||| ||||||||||    
T  30587436 tgtttggacgaggtaattggaaaattttagagaatttagaattctaggca-atttaaaagattcaattaaatt 30587507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 178 - 347
Target Start/End: Complemental strand, 51038956 - 51038784
Alignment:
Q  178 ggaaaaagataggtagacaccatttcttaagtacctctcatg-atacccc-atgtggcagagatattttagtactttcacatcacaccatcacctcctct 275  Q
    ||||||||||||| ||||||| ||| | | |||| ||||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||| ||| |    
T  51038956 ggaaaaagataggcagacaccttttttcatgtacatctcatgtacacccctatgtggcagagatattttagtaatttcacatcacaccatcacccccttt 51038857  T
Q  276 -catatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
     ||| |||||| |||||||||||||||||| ||||||||||  |||||||| |||||  ||||||||||||||    
T  51038856 tcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtatgccacctaag 51038784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 30303666 - 30303553
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |  |||||||| |||||||| ||     
T  30303666 agtgtgtttggatgagataattgagaaattttaaagaatttaaaattctaggca-attcaaatgattcaattaaactaccttcatttctaaatatttttg 30303568  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  30303567 tttggatggagtaat 30303553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 584 - 696
Target Start/End: Complemental strand, 47108765 - 47108653
Alignment:
Q  584 gtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattat 682  Q
    ||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||   ||||||| | |||||| || |    
T  47108765 gtgtgtttggatgaggtaattggaaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaattactttcatttctcaatatttttgt 47108667  T
Q  683 ttgtatggagtaat 696  Q
    ||| ||||||||||    
T  47108666 ttggatggagtaat 47108653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 40547770 - 40547845
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  40547770 agtgtgtttggatgaggtaattgagaaattttaaagaatttaaaattctaggca-atttaaatgattcaattaaatt 40547845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 24705876 - 24705763
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaa-ttttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| |||||||||||| |||| ||||||||| |||| |||| | ||||||||||| ||||| |||||  ||||||||||||| |||||     
T  24705876 agtgtgtttggatggggtaattgaaaaattttgaagaatttagaattttaggga-attcaaatgattcaattcaattgctttcatttttaaatgttattg 24705778  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||| ||||||    
T  24705777 tttggatgaagtaat 24705763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 42775782 - 42775895
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||| | ||| ||||||| ||||||||||   ||||||| |||||| | ||     
T  42775782 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctagg-aaatttaaatgattcaattaaattactttcatttctaaatacttttg 42775880  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  42775881 tttggatggagtaat 42775895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 54566720 - 54566607
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||||||| ||| | ||||||||||| ||||| |||||  |||||| |||||| |||||     
T  54566720 agtgtgtttggatggggtaattgagaaattttaatgaatttaaaattcaaggga-attcaaatgattcaattcaattgctttcattcttaaatgttattg 54566622  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||| ||||||    
T  54566621 tttggatgaagtaat 54566607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 2126384 - 2126309
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  2126384 agtgtgtttggatggggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 2126309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 46242624 - 46242737
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||  ||||||||||||||||| ||||||| ||| ||| |||||||  |||||||||   ||||||||| |||||| ||     
T  46242624 agtgtgtttggatgaggtaattgggaaattttaaagaatttataattctaagca-atttaaatgattgaattaaattactttcatttttcaatatttttg 46242722  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  46242723 tttggatggagtaat 46242737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 17727958 - 17727844
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaatttta--aagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatt 680  Q
    |||||||||||||| ||||||||||  ||||   ||||||||| ||||||| ||| |||||||| || ||||||||||| |||||||| |||||||| ||    
T  17727958 agtgtgtttggatgaggtaattgaattttttttgaagaatttagaattctaagca-attcaaattattcaattaaattgacttcatttctaaatattctt 17727860  T
Q  681 atttgtatggagtaat 696  Q
     |||| ||||| ||||    
T  17727859 gtttggatggaataat 17727844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 35470670 - 35470595
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    ||||||||||||||  |||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  35470670 agtgtgtttggatgatgtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 35470595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 355
Target Start/End: Complemental strand, 46192551 - 46192372
Alignment:
Q  178 ggaaaaagataggtagacaccatttcttaagt-acctctcatg-ataccccatgtggcagagatattttagtactttcacatcacaccatcacctcctct 275  Q
    ||||||||||||||||||||| ||| || |   |||||| ||| | |||||||||  ||| | ||||||| |  ||||||||||||  |||||| | | |    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttt 46192452  T
Q  276 catatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaagatgattca 355  Q
     || |||||| |||||||||||| ||||| |||||| |||  |||||||| |||| | |||||||||||||| |||||||    
T  46192451 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattca 46192372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 668
Target Start/End: Complemental strand, 41140018 - 41139933
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcattt 668  Q
    |||||||||||| |  |||||||| ||||||||||||||||||||||||| ||| ||| ||||||| |||||||||| | |||||||    
T  41140018 agtgtgtttggaagaagtaattgagaaattttaaagaatttaaaattctaagca-atttaaatgattcaattaaattattttcattt 41139933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 3803772 - 3803719
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  3803772 agtgtgtttggatgaggtaatttgaaaattttaaagaatttaaaattttaggca 3803719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 10633239 - 10633186
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  10633239 agtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctaggca 10633186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 584 - 692
Target Start/End: Complemental strand, 42776630 - 42776522
Alignment:
Q  584 gtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattat 682  Q
    ||||||||||||| |||||||| |||||||||||||||||| ||| ||| ||| ||| ||||||| ||||| ||||   ||||||||| |||||| || |    
T  42776630 gtgtgtttggatgaggtaattggaaaattttaaagaatttagaatcctaagca-atttaaatgattcaattcaattactttcatttttcaatatttttgt 42776532  T
Q  683 ttgtatggag 692  Q
    ||| ||||||    
T  42776531 ttggatggag 42776522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 674
Target Start/End: Original strand, 19461268 - 19461359
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaat 674  Q
    |||||||||| ||| ||||||| |||  ||||||||||||||||||| |||||| ||| | ||||| ||||||||||||||| |||| |||||    
T  19461268 agtgtgtttgaatgaggtaattagaattttttaaagaatttaaaattttaggca-atttagatgattcaattaaattgtctttatttctaaat 19461359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 347
Target Start/End: Original strand, 52191262 - 52191370
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatg 338  Q
    |||||||||| |||| ||||||| ||||| ||||||| ||   |||| |||||||||||||||||| |||||||| |  |||| |||||||  |  ||||    
T  52191262 tattttagtaatttcgcatcacatcatcatctcctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatg 52191361  T
Q  339 ccacctaag 347  Q
    |||||||||    
T  52191362 ccacctaag 52191370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 632
Target Start/End: Original strand, 21012441 - 21012491
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaa-ttttaaagaatttaaaattctag 632  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  21012441 agtgtgtttggatgaggtaatttaaaaattttaaagaatttaaaattctag 21012491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 656
Target Start/End: Complemental strand, 21782519 - 21782446
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaa 656  Q
    |||||||||||||| ||||||||  ||||||||||||||||| |||||||| || ||||||||||| | ||||||    
T  21782519 agtgtgtttggatgaggtaattgtgaaattttaaagaatttagaattctagaca-attcaaatgattccattaaa 21782446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 607 - 693
Target Start/End: Complemental strand, 26535009 - 26534924
Alignment:
Q  607 aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggagt 693  Q
    ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||   ||||||||| |||| | || |||| |||||||    
T  26535009 aaattttaaagaatttagaattctaggca-atttaaatgattcaattaaattactttcatttttcaatacttttgtttggatggagt 26534924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 632
Target Start/End: Complemental strand, 31474057 - 31474007
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctag 632  Q
    |||||||||||||| ||||||| | ||||||||||||||||||||||||||    
T  31474057 agtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctag 31474007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 241 - 355
Target Start/End: Complemental strand, 35545039 - 35544925
Alignment:
Q  241 ttttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgcc 340  Q
    |||||||| ||| |||||| | ||||||| | | | ||||||||| |||||||||||| ||| |||||||| |||| |||| ||| |||  | |||| ||    
T  35545039 ttttagtaattttacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtatacc 35544940  T
Q  341 acctaagatgattca 355  Q
    |||||||||| ||||    
T  35544939 acctaagatggttca 35544925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 587 - 685
Target Start/End: Original strand, 38060183 - 38060280
Alignment:
Q  587 tgtttggatgtggtaattgaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttg 685  Q
    ||||||||||  |||||||||||||||| ||| ||||||||| ||||||| ||||||||||  |||| | ||| || ||||| |||||||  |||||||    
T  38060183 tgtttggatggtgtaattgaaaattttagagagtttaaaattgtaggcat-ttcaaatgattaaattgatttgcctacatttctaaatatgtttatttg 38060280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 27284222 - 27284297
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    ||||||||||||||   ||||| ||||||||||||||||||| ||||||||||| ||| ||||| | ||||||||||    
T  27284222 agtgtgtttggatgatataatttgaaaattttaaagaatttagaattctaggca-atttaaatggttcaattaaatt 27284297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 31948119 - 31948044
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaa-ttttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||| ||||||| | |||||||| ||| ||||||||||||||||||| |||||| ||| ||||||| ||||||||||    
T  31948119 agtgcgtttggacgaggtaattggaaacttttaaagaatttaaaattttaggca-atttaaatgattcaattaaatt 31948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 1237586 - 1237528
Alignment:
Q  37 aacaatatagcaaatataatata--ttcttatctttttaaatgacaacatcaatataag 93  Q
    |||||||||| ||||||||||||  ||||||||||||| ||||||| || |||||||||    
T  1237586 aacaatatagaaaatataatataaattcttatcttttttaatgacaccaacaatataag 1237528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 653
Target Start/End: Complemental strand, 16516714 - 16516644
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaatt 653  Q
    |||||||||||||| ||||||||| ||||||| ||||||||| |||||| || | ||||||||||| |||||    
T  16516714 agtgtgtttggatgaggtaattgagaaattttgaagaatttagaattcttggta-attcaaatgattcaatt 16516644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 2694250 - 2694312
Alignment:
Q  39 caatatagcaaatataatatat-tcttatctttttaaatgacaacatcaatataagattcttg 100  Q
    ||||||| |||||||||||||  |||||| ||||||||||||| || |||||||| |||||||    
T  2694250 caatataccaaatataatataactcttatttttttaaatgacatcaacaatataatattcttg 2694312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 311
Target Start/End: Complemental strand, 54849931 - 54849845
Alignment:
Q  225 ccatgtggcagagatattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaa 311  Q
    ||||||| || || ||||||| || |||||||||||| ||||| |  ||||||| |||||| ||||| |||||||||| | ||||||    
T  54849931 ccatgtgacaaaggtattttaataatttcacatcacatcatcatcctctctcatctcttctttcaatatttttgtcacttgtcacaa 54849845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 584 - 691
Target Start/End: Original strand, 5579654 - 5579761
Alignment:
Q  584 gtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattat 682  Q
    ||||||||| ||| ||||||| ||||||||| ||||||||||||||| |  || ||| ||||||| ||||||||||   ||||||| | |||| | ||||    
T  5579654 gtgtgtttgaatgaggtaattagaaaattttgaagaatttaaaattccaaaca-atttaaatgattcaattaaattcctttcatttctcaatacttttat 5579752  T
Q  683 ttgtatgga 691  Q
    ||| |||||    
T  5579753 ttggatgga 5579761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 347
Target Start/End: Complemental strand, 49243944 - 49243836
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatg 338  Q
    |||||||||| ||| |||||| | |||||| |  | | || |||||| |||||||||||| ||||| |||||| |||  |||| ||| |||| | |||||    
T  49243944 tattttagtaattttacatcatatcatcacttttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatg 49243845  T
Q  339 ccacctaag 347  Q
    |||||||||    
T  49243844 ccacctaag 49243836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 56118171 - 56118246
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| |||||||| |||| | | ||||||||||| ||| |||||||  |||||||||    
T  56118171 agtgtgtttggatgaggtaattgacaaattttagagaactcagaattctaggca-atttaaatgatttaattaaatt 56118246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 32839190 - 32839303
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||  ||||||  |||||||||||     
T  32839190 agtgtgtttagatgaggtaattgagaaattttaaagaatttaaaattctaggca-attcaaatgattcaattaaattgctttcattcataaatattattg 32839288  T
Q  682 tttgtatggagtaat 696  Q
    |||| |||| |||||    
T  32839289 tttggatggtgtaat 32839303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 582 - 696
Target Start/End: Original strand, 7167189 - 7167303
Alignment:
Q  582 aagtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatt 680  Q
    |||||||||||||||  ||| |||| ||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||  |||||| ||||||||||||    
T  7167189 aagtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggta-attcaaatgattcaattaaattgctttcattcttaaatattatt 7167287  T
Q  681 atttgtatggagtaat 696  Q
     |||| ||||||||||    
T  7167288 gtttggatggagtaat 7167303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 582 - 691
Target Start/End: Original strand, 7611420 - 7611529
Alignment:
Q  582 aagtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatt 680  Q
    |||||||||||||||  |||||||| ||||||| ||||||||||||||||||| | ||||||||||| |||||||||||  ||||||  |||||||||||    
T  7611420 aagtgtgtttggatggagtaattgagaaattttgaagaatttaaaattctaggta-attcaaatgattcaattaaattgctttcattcctaaatattatt 7611518  T
Q  681 atttgtatgga 691  Q
     |||| |||||    
T  7611519 gtttggatgga 7611529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 35047203 - 35047278
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  35047203 agtgtgtttggatggggtaattgagaaattttaaagaatttaaaattctaggca-atttaaatgattcaattaaatt 35047278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 769579 - 769504
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  769579 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 769504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 33188791 - 33188866
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  33188791 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 33188866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 39630773 - 39630698
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| |||||||||| |||||||||||||||||| ||| ||||||| ||||||||||    
T  39630773 agtgtgtttggatgaggtaattgagaaattttaaaaaatttaaaattctaggca-atttaaatgattcaattaaatt 39630698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 3092793 - 3092680
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||| | ||| ||||||| ||||||||||   || |||| |||||| | ||     
T  3092793 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctagg-aaatttaaatgattcaattaaattacttttatttctaaatacttttg 3092695  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  3092694 tttggatggagtaat 3092680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 607 - 677
Target Start/End: Complemental strand, 30265853 - 30265784
Alignment:
Q  607 aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatatt 677  Q
    ||||||||||||||||| ||||||| ||| |||||||||||  ||||||||||||||||||| ||||||||    
T  30265853 aaattttaaagaatttagaattctaagca-attcaaatgattaaattaaattgtcttcatttctaaatatt 30265784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 1583334 - 1583409
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| | ||||||||    
T  1583334 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattccattaaatt 1583409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 7309438 - 7309513
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||| ||| ||| ||||||| ||||||||||    
T  7309438 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaagca-atttaaatgattcaattaaatt 7309513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 587 - 658
Target Start/End: Complemental strand, 44256177 - 44256106
Alignment:
Q  587 tgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  44256177 tgtttggatgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 44256106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 14306366 - 14306479
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||| || ||| ||||| | |||||||| ||  ||||||| | |||| | ||     
T  14306366 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctagaca-attaaaatggttcaattaaaatgctttcatttctcaatacttttg 14306464  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  14306465 tttggatggagtaat 14306479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 30698828 - 30698715
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  ||| |||| ||||||| ||||||||| |||| |||| | |||||||||||  ||||||||||  |||||| ||||||||||||     
T  30698828 agtgtgtttggatggagtatttgagaaattttgaagaatttagaattttaggta-attcaaatgatttaattaaattgctttcattcttaaatattattg 30698730  T
Q  682 tttgtatggagtaat 696  Q
    |||| || |||||||    
T  30698729 tttggatagagtaat 30698715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 10480327 - 10480274
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||||||||||    
T  10480327 agtgtgcttggatgaggtaatttgaaaattttaaagaatttaaaattctaggca 10480274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 583 - 663
Target Start/End: Original strand, 31703925 - 31704005
Alignment:
Q  583 agtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtctt 663  Q
    |||||||||| ||| |||||||| ||||||||| | |||||| |||||||| || ||||||||||| |||||||||||||||    
T  31703925 agtgtgtttgaatgaggtaattggaaaattttagataatttagaattctagtca-attcaaatgattcaattaaattgtctt 31704005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 250 - 347
Target Start/End: Complemental strand, 36315679 - 36315582
Alignment:
Q  250 tttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    ||||||||||||  |||||||| | | || |||||| |||||||||||| ||||| |||||| |||  |||||||| |||| | ||||||||||||||    
T  36315679 tttcacatcacattatcacctctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 36315582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 13018292 - 13018217
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||||||||| | ||| |||| || ||||||||||    
T  13018292 agtgtgtttggatgaggtaattgagaaattataaagaatttaaaattctaggta-atttaaataattcaattaaatt 13018217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 19231019 - 19231093
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||| ||| ||||||| ||||||||||    
T  19231019 agtgtgtttggatgaggtaattgagaaattttaaagaa-ttagaattctaggca-atttaaatgattcaattaaatt 19231093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 637 - 696
Target Start/End: Original strand, 7227616 - 7227675
Alignment:
Q  637 attcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggagtaat 696  Q
    ||||||||||| |||||||||||  |||||| |||||||||||| |||| ||||||||||    
T  7227616 attcaaatgattcaattaaattgctttcattcttaaatattattgtttggatggagtaat 7227675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 668
Target Start/End: Complemental strand, 2925198 - 2925113
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcattt 668  Q
    ||||||||||||||  |||||||  ||||||||||||||||| ||||||||||| ||| ||||||| || ||||| ||| |||||||    
T  2925198 agtgtgtttggatgaagtaattgggaaattttaaagaatttagaattctaggca-atttaaatgattcatttaaaatgttttcattt 2925113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 692
Target Start/End: Original strand, 8735967 - 8736076
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||| | ||||||||||||||||| ||| ||| ||| ||| ||||||| ||||||||||   ||||||| | |||||| ||     
T  8735967 agtgtgtttggatgaggtaattgggaaattttaaagaatttagaatcctaagca-atttaaatgattcaattaaattactttcatttctcaatatttttg 8736065  T
Q  682 tttgtatggag 692  Q
    |||| ||||||    
T  8736066 tttggatggag 8736076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 632
Target Start/End: Complemental strand, 11794103 - 11794053
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctag 632  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||||||||    
T  11794103 agtgtgtttggattaggtaatttgaaaattttaaagaatttaaaattctag 11794053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 656
Target Start/End: Original strand, 28021708 - 28021781
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaa 656  Q
    |||||||||||||| | ||||||| ||||||||||||||||| |||||| | || ||||||||||| ||||||||    
T  28021708 agtgtgtttggatgagctaattgagaaattttaaagaatttagaattcttgaca-attcaaatgattcaattaaa 28021781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 347
Target Start/End: Complemental strand, 33732764 - 33732590
Alignment:
Q  174 ataaggaaaaagataggtagacaccatttcttaagtacctctcatg-ataccccatgtggcagagatattttagtactttcacatcacaccatcacctcc 272  Q
    ||||||||||||||||||||||||| ||| | |   |||||| ||| | ||||||| |   || | |||||||||| ||| |||||| | || ||||       
T  33732764 ataaggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccctt 33732665  T
Q  273 tctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    | |||| |||||| |||||||||||| ||||| |||||| |||  |||||||| |||| | ||||||||||||||    
T  33732664 tttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 33732590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 744900 - 744964
Alignment:
Q  37 aacaatatagcaaatataatat--attcttatctttttaaatgacaacatcaatataagattctt 99  Q
    ||||||||||||||||||||||  ||| |||||||||||||| ||| || |||||||| ||||||    
T  744900 aacaatatagcaaatataatataaatttttatctttttaaataacaccaacaatataacattctt 744964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 658
Target Start/End: Complemental strand, 11141853 - 11141777
Alignment:
Q  582 aagtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| ||| |||| || ||| ||||||| | ||||||||    
T  11141853 aagtgtgtttggatgaggtaattgagaaattttaaagaatttagaatcctagaca-atttaaatgattccattaaatt 11141777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 13535834 - 13535749
Alignment:
Q  180 aaaaagataggtagacaccatttcttaagtacctctcatg-atacccc-atgtggcagagatattttagtactttcacatcacacc 263  Q
    |||||||||| |||||| | ||| ||| |||||||||||| ||||||| ||||| ||| | |||||||||| ||||||||||||||    
T  13535834 aaaaagatagatagacatccttttttatgtacctctcatgtatacccccatgtgacaggggtattttagtaatttcacatcacacc 13535749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 24137154 - 24137226
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaa 311  Q
    |||||||||| |||||||||||| | ||| | | | |||| |||||| |||||||||||||||||| ||||||    
T  24137154 tattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaa 24137226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 347
Target Start/End: Complemental strand, 44958242 - 44958134
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatg 338  Q
    |||||||||| ||| |||||| | |||||||   | | || |||||| |||||||||||| ||||| |||||| |||  |||||||| |||| | |||||    
T  44958242 tattttagtaattttacatcatatcatcacccttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 44958143  T
Q  339 ccacctaag 347  Q
    |||||||||    
T  44958142 ccacctaag 44958134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 598 - 668
Target Start/End: Original strand, 2274327 - 2274396
Alignment:
Q  598 ggtaattgaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcattt 668  Q
    |||||||| |||||||||| |||||| |||| ||| || ||| ||||||| ||||||||||| ||||||||    
T  2274327 ggtaattggaaattttaaataatttataattttagaca-atttaaatgattcaattaaattgacttcattt 2274396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 628
Target Start/End: Complemental strand, 17906189 - 17906143
Alignment:
Q  583 agtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaatt 628  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||    
T  17906189 agtgtgtttggatgaggtaattgaaaaattataaagaatttaaaatt 17906143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 631
Target Start/End: Complemental strand, 21504998 - 21504948
Alignment:
Q  582 aagtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattcta 631  Q
    ||||||||||||||| ||||||||  ||||||||||||||||| |||||||    
T  21504998 aagtgtgtttggatgaggtaattgggaaattttaaagaatttagaattcta 21504948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 41188911 - 41188833
Alignment:
Q  226 catgtggcagagatattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacat 304  Q
    |||||| |||||||||||||||| ||| |||||||| ||||| | | | ||||||| | | |||||||||||| |||||    
T  41188911 catgtgtcagagatattttagtaattttacatcacatcatcatcccttttcatatcatttttcaatgtttttgccacat 41188833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 631
Target Start/End: Complemental strand, 8736559 - 8736510
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattcta 631  Q
    ||||| |||||||| ||| ||| |||||||||||||||||||||||||||    
T  8736559 agtgtatttggatgaggttatttgaaaattttaaagaatttaaaattcta 8736510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 347
Target Start/End: Original strand, 37914309 - 37914406
Alignment:
Q  250 tttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    ||||||||||||  |||||| | | | || |||||| |||||||||||| ||||| |||||| |||  |||| ||| |||| | ||||||||||||||    
T  37914309 tttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaag 37914406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 634
Target Start/End: Complemental strand, 7684652 - 7684600
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaa-ttttaaagaatttaaaattctaggc 634  Q
    |||||||||||||  ||||||| |||| ||||||||||||||||||| |||||    
T  7684652 agtgtgtttggataaggtaatttaaaaattttaaagaatttaaaattttaggc 7684600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 584 - 635
Target Start/End: Original strand, 19193746 - 19193798
Alignment:
Q  584 gtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggca 635  Q
    ||||||||||||| |||||||| ||||||||||| || |||||||| ||||||    
T  19193746 gtgtgtttggatgaggtaattggaaaattttaaaaaaattaaaattttaggca 19193798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 630
Target Start/End: Original strand, 41585196 - 41585244
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattct 630  Q
    ||||| |||||||| ||||||||| ||||||||||||||||| ||||||    
T  41585196 agtgtctttggatgaggtaattgataaattttaaagaatttagaattct 41585244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 598 - 685
Target Start/End: Complemental strand, 10167027 - 10166940
Alignment:
Q  598 ggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttg 685  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| ||||    
T  10167027 ggtaattgataaattttaaagaatttaaaattctaggca-attcaaatgattcaattaaaatgtcttcatttctaaatattattgtttg 10166940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 37446885 - 37446998
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||| | ||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||  ||||||  |||||||||||     
T  37446885 agtgtgtttggatggggtaattaagaaattttgaagaatttataattctaggta-attcaaatgattcaattaaattgctttcattcctaaatattattg 37446983  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  37446984 tttggatggagtaat 37446998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 584 - 692
Target Start/End: Complemental strand, 44571224 - 44571116
Alignment:
Q  584 gtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattat 682  Q
    |||||||||||||  ||| |||| ||||||| ||||||||||||||||||| | ||||||||||| |||||||||||  |||||| |||||||||||| |    
T  44571224 gtgtgtttggatggagtatttgagaaattttgaagaatttaaaattctaggta-attcaaatgattcaattaaattgctttcattcttaaatattattgt 44571126  T
Q  683 ttgtatggag 692  Q
    ||| ||||||    
T  44571125 ttggatggag 44571116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 37036506 - 37036619
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||| | ||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||  ||||||  |||||||||||     
T  37036506 agtgtgtttggatggggtaattaagaaattttgaagaatttagaattctaggta-attcaaatgattcaattaaattgctttcattcctaaatattattg 37036604  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||| ||||    
T  37036605 tttggatggaataat 37036619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 37447428 - 37447541
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  ||| |||| ||||||| ||||||||| ||||||||| | ||| ||||||| |||||||||||  || ||| |||||||||||||    
T  37447428 agtgtgtttggatgaagtatttgagaaattttgaagaatttagaattctaggta-atttaaatgattcaattaaattgcttttattcttaaatattatta 37447526  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  37447527 tttggatggagtaat 37447541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 946927 - 946852
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  946927 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 946852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 583 - 692
Target Start/End: Complemental strand, 39887613 - 39887504
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  |||||||| ||||||| ||||||||| |||| |||| | ||||||||||| |||||||||||  ||||||  |||||||||||     
T  39887613 agtgtgtttggatggagtaattgagaaattttgaagaatttagaattttaggta-attcaaatgattcaattaaattgctttcattcctaaatattattg 39887515  T
Q  682 tttgtatggag 692  Q
    |||| ||||||    
T  39887514 tttggatggag 39887504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 15467488 - 15467563
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||| | ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  15467488 agtgtgtttggatgaggtaattaagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 15467563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 350
Target Start/End: Original strand, 19258674 - 19258845
Alignment:
Q  180 aaaaagataggtagacaccatttcttaagtacctctcatg-ataccccatgtggcagagatattttagtactttcacatcacaccatcacctcctctcat 278  Q
    ||||||||||||||||||| ||| |||   | |||||||| | ||||||||||  ||  |||||||| || |||||||||||| || |||| | | ||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 19258773  T
Q  279 atcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaagatg 350  Q
     |||| | |||||||||||| ||||| |||||| | || |||||||| |||  | ||||||||||| |||||    
T  19258774 ctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatg 19258845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 35499596 - 35499483
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  |||||| ||||||||||||||||||| ||||||||  | ||| ||||||| ||||||||||   ||||||| | |||| | |||    
T  35499596 agtgtgtttggatgaagtaatttgaaaattttaaagaatttagaattctagata-atttaaatgattcaattaaattacattcatttctcaatactttta 35499498  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  35499497 tttggatggagtaat 35499483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 47541853 - 47541906
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  47541853 agtgtgtttggatgaggtaatttagaaattttaaagaatttaaaattctaggca 47541906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 6470230 - 6470344
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaa--ttttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatt 680  Q
    |||||||||||||| || |||||| ||  |||||||||||||| ||||||||| | ||| |||||||  ||||||||| | ||||||||| |||| | ||    
T  6470230 agtgtgtttggatgaggcaattgagaaatttttaaagaatttagaattctaggta-atttaaatgatttaattaaattattttcatttttcaatagtttt 6470328  T
Q  681 atttgtatggagtaat 696  Q
     |||| ||||||||||    
T  6470329 gtttggatggagtaat 6470344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 586 - 633
Target Start/End: Original strand, 26500947 - 26500995
Alignment:
Q  586 gtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctagg 633  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  26500947 gtgtttggatgaggtaatttgaaaattttaaagaatttaaaattctagg 26500995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 583 - 633
Target Start/End: Original strand, 47165077 - 47165128
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctagg 633  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  47165077 agtgtgtttggatgaggtaatttgaaaattttaaagaatttaaaattttagg 47165128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 656
Target Start/End: Complemental strand, 220700 - 220627
Alignment:
Q  583 agtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaa 656  Q
    |||||||||||||| |||||||| |||||| || |||||||| ||||||||||| ||| ||||||| ||||||||    
T  220700 agtgtgtttggatgaggtaattgaaaaattatagagaatttagaattctaggca-atttaaatgattcaattaaa 220627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 692
Target Start/End: Complemental strand, 8225320 - 8225211
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  |||||||| ||||||| ||||||||| |||| |||| | ||||||||||  |||||||||||  ||||||  | |||||||||     
T  8225320 agtgtgtttggatggagtaattgagaaattttgaagaatttagaattttaggta-attcaaatgaatcaattaaattgctttcattccttaatattattg 8225222  T
Q  682 tttgtatggag 692  Q
    |||| ||||||    
T  8225221 tttggatggag 8225211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 8848915 - 8848989
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaatt 313  Q
    ||||||| || |||||||||||||  ||||| |||| ||| |||| | |||||||||||||||||| ||||||||    
T  8848915 tattttaataatttcacatcacactctcaccccctcccatctcttatttcaatgtttttgtcacatgtcacaatt 8848989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 631
Target Start/End: Original strand, 24273086 - 24273135
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattcta 631  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  24273086 agtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattcta 24273135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 347
Target Start/End: Original strand, 34307135 - 34307308
Alignment:
Q  176 aaggaaaaagataggtagacaccatttcttaagtacctctcatg-atac-cccatgtggcagagatattttagtactttcacatcacaccatcacctcct 273  Q
    ||||||||||||||||||||||| ||| | |   |||||| ||| | || ||||||||  || | |||||||||| ||| |||||| | |||||||   |    
T  34307135 aaggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttt 34307234  T
Q  274 ctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
     ||||||||||| |||||||||||| ||| | |||||| |||  |||| ||| |||| | ||||||||||||||    
T  34307235 ttcatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaag 34307308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 669
Target Start/End: Complemental strand, 4663853 - 4663772
Alignment:
Q  587 tgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttt 669  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||| ||  |||||||| || |||||||| ||  ||||||||    
T  4663853 tgtttggatgaggtaattgacaaattttaaggaatttaaaattctaagc--attcaaattattcaattaaaatgctttcatttt 4663772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 28632128 - 28632203
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| | ||||||| ||||| |||| |||||| ||||||||||| ||| ||||||| ||||||||||    
T  28632128 agtgtgtttggatgagataattgagaaattataaaaaatttagaattctaggca-atttaaatgattcaattaaatt 28632203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 696
Target Start/End: Complemental strand, 32647825 - 32647727
Alignment:
Q  598 ggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggagtaat 696  Q
    ||||||||| ||||||||||||||||| ||||||| | | ||| ||||||| ||||||||||   ||||||| |||||| | || |||| ||||||||||    
T  32647825 ggtaattgagaaattttaaagaatttagaattcta-gaaaatttaaatgattcaattaaattactttcatttctaaatacttttgtttggatggagtaat 32647727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 628
Target Start/End: Original strand, 23969441 - 23969487
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaa-attttaaagaatttaaaatt 628  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||    
T  23969441 agtgtgtttggatggggtaattgaaattttttaaagaatttaaaatt 23969487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 9642929 - 9643018
Alignment:
Q  241 ttttagtactttcacatcacaccatcacctcct-ctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaa 329  Q
    |||||||| |||||||||| | ||||||| ||| ||||| |||||| ||| |||||||||||  | |||||||| |  ||||||||||||    
T  9642929 ttttagtaatttcacatcatatcatcacccccttctcatctcttctttcattgtttttgtcatgtgtcacaattatgtgtgggtgttaaa 9643018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 647
Target Start/End: Original strand, 37447973 - 37448037
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgat 647  Q
    |||||||||||||| ||||||||| ||||||| | ||||||| ||||||||| | |||||||||||    
T  37447973 agtgtgtttggatggggtaattgagaaattttgatgaatttagaattctaggga-attcaaatgat 37448037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 607 - 696
Target Start/End: Complemental strand, 50472238 - 50472150
Alignment:
Q  607 aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggagtaat 696  Q
    ||||||||||||||||| |||| |||||| ||| |||| || ||||||||||   ||||||||| |||| | || |||| ||||||||||    
T  50472238 aaattttaaagaatttagaattttaggca-atttaaattattcaattaaattactttcatttttcaatacttttgtttggatggagtaat 50472150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 10382219 - 10382179
Alignment:
Q  37 aacaatatagcaaatataatatattcttatctttttaaatg 77  Q
    |||| |||| |||||||| ||||||||||||||||||||||    
T  10382219 aacattataacaaatatattatattcttatctttttaaatg 10382179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 21267348 - 21267423
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| | ||||||| ||||||||||||||||  |||| |||||| ||| | ||||| ||||||||||    
T  21267348 agtgtgtttggatgagataattgagaaattttaaagaatttcgaattataggca-atttagatgattcaattaaatt 21267423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 32128631 - 32128556
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||| | | ||||||||| |||||||||||||||||||||| |||| | |||  |||||| ||||||||||    
T  32128631 agtgtgtttgaacgaggtaattgagaaattttaaagaatttaaaattttaggta-attttaatgattcaattaaatt 32128556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 39249961 - 39250041
Alignment:
Q  275 tcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaagatgattca 355  Q
    |||| |||||| |||||||||||| ||| | |||||| |||   ||||||| |||| | ||||||||||||||||| ||||    
T  39249961 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttca 39250041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 41480956 - 41481031
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaa-attttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||| |||  |||||||| |||||||||| ||||||  ||||||| || ||||||||||    
T  41480956 agtgtgtttggatgaggtaatttaaattttttaaagcatttaaaattttaggca-gttcaaattattcaattaaatt 41481031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 24051819 - 24051706
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  ||| |||| ||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||  |||||||||||||||||||     
T  24051819 agtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggta-attcaaatgattcaattaaattgctttcatttttaaatattattg 24051721  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  24051720 tttggatggagtaat 24051706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 28324225 - 28324338
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  ||| |||| ||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||| |||||| ||||||||||||     
T  28324225 agtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggta-attcaaatgattcaattaaattgttttcattcttaaatattattt 28324323  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  28324324 tttggatggagtaat 28324338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 239 - 347
Target Start/End: Original strand, 42668844 - 42668951
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatg 338  Q
    |||| ||||| |||||||||| ||||||||||| ||||||||||||| | |||||||||| ||| | ||||||||||  |||||||| |||||| |||||    
T  42668844 tattgtagtaatttcacatcataccatcacctc-tctcatatcttcttttaatgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatg 42668942  T
Q  339 ccacctaag 347  Q
    |||||||||    
T  42668943 ccacctaag 42668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 24045511 - 24045398
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  ||| |||| ||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||  |||||| ||||||||||||     
T  24045511 agtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggta-attcaaatgattcaattaaattgctttcattcttaaatattattg 24045413  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  24045412 tttggatggagtaat 24045398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 10593619 - 10593507
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||| |||||||||| |||||||||||||||||| ||| ||||||| ||||||||||   ||||||||| |||| | ||     
T  10593619 agtgtgtttggatgaggtaattgagaaattttaaa-aatttaaaattctaggca-atttaaatgattcaattaaattactttcattttttaatacttttg 10593522  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  10593521 tttggatggagtaat 10593507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 29611870 - 29611795
Alignment:
Q  583 agtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| |||||| ||| ||||||| ||||||||||    
T  29611870 agtgtgtttggatgtggtaattggaaaattttaaagaatttagaattttaggca-atttaaatgattcaattaaatt 29611795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 31980048 - 31980123
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  31980048 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 31980123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 587 - 658
Target Start/End: Original strand, 40733641 - 40733712
Alignment:
Q  587 tgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  40733641 tgtttggatgaggtaattgagaaattttaaagaatttaaaattctaggca-atttaaatgattcaattaaatt 40733712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 44346223 - 44346298
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  44346223 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 44346298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 31550 - 31620
Alignment:
Q  280 tcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaagatg 350  Q
    |||||| |||||||||||| ||||| ||||||||||| |||||||| |||||| |||||| ||||||||||    
T  31550 tcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatg 31620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 583 - 676
Target Start/End: Complemental strand, 9983195 - 9983102
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatat 676  Q
    |||||||||||||| ||||||||| ||||||| ||||||||| |||||||  || ||||||||||| ||||| |||||  |||||||||||||||    
T  9983195 agtgtgtttggatgaggtaattgagaaattttgaagaatttagaattctaatca-attcaaatgattcaattgaattgatttcatttttaaatat 9983102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 14785 - 14710
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| || |||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  14785 agtgtgtttggatgaggaaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 14710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 29256915 - 29256990
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||| | ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  29256915 agtgtgtttggacgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 29256990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 31976667 - 31976742
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    ||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  31976667 agtgtttttggatgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 31976742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 33376831 - 33376906
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||| | ||| ||||||| ||||||||||    
T  33376831 agtgtgtttggatgaggtaattgataaattttaaagaatttagaattctaggta-atttaaatgattcaattaaatt 33376906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 35978594 - 35978669
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||| || ||| ||||||| ||||||||||    
T  35978594 agtgtgtttggatgaggcaattgagaaattttaaagaatttaaaattctagtca-atttaaatgattcaattaaatt 35978669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 43185527 - 43185452
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||| || ||| ||||||| ||||||||||    
T  43185527 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctagaca-atttaaatgattcaattaaatt 43185452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 694
Target Start/End: Complemental strand, 44890145 - 44890034
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||  ||||||||| ||||||| || |||||| ||||||||| | |||||||| ||  ||||||||||  |||||| ||||||||||||     
T  44890145 agtgtgtttggataaggtaattgagaaattttgaaaaatttagaattctaggta-attcaaattattaaattaaattgctttcattcttaaatattattg 44890047  T
Q  682 tttgtatggagta 694  Q
    |||| ||||||||    
T  44890046 tttggatggagta 44890034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 656
Target Start/End: Original strand, 26519984 - 26520057
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaa 656  Q
    |||||||||||||   |||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  26519984 agtgtgtttggataaagtaattgataaattttaaagaatttaaaattctaggca-atttaaatgattcaattaaa 26520057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 33986544 - 33986431
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||| |||||||||||||||   ||||||||||| ||| ||||||| ||||||||||   ||||||| | |||| | ||     
T  33986544 agtgtgtttggatgaggtaattgagaaattttaaagaattcggaattctaggca-atttaaatgattcaattaaattactttcatttctcaatacttttg 33986446  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  33986445 tttggatggagtaat 33986431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 36103308 - 36103255
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  36103308 agtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctaggca 36103255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 29482343 - 29482418
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||| |||| | ||| ||||||| ||||||||||    
T  29482343 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattatagg-aaatttaaatgattcaattaaatt 29482418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 668
Target Start/End: Complemental strand, 8049724 - 8049639
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaa-attttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcattt 668  Q
    |||||||||||||| |||||||||||  |||||||||||||| | ||||| | | ||||||||||| |||||||| ||| |||||||    
T  8049724 agtgtgtttggatgaggtaattgaaattttttaaagaatttagagttctatgta-attcaaatgattcaattaaaatgttttcattt 8049639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 346
Target Start/End: Complemental strand, 33726203 - 33726033
Alignment:
Q  178 ggaaaaagataggtagacaccatttcttaagtacctctcatg-ataccccatgtggcagagatattttagtactttcacatcacaccatca-cctcctct 275  Q
    ||||||||||||||||||||| ||| |||   ||||| |||| | ||  ||||||  || | |||||||||| |||||||||||| | ||| || | | |    
T  33726203 ggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccactttt 33726104  T
Q  276 catatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaa 346  Q
    ||| |||||| |||||||||||| ||||| |||||| |||  |||||||| |||  | |||||||||||||    
T  33726103 catctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaa 33726033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 36624812 - 36624925
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||| |||| | ||||||| ||||||| ||||||||| ||||||| | | ||||||||||| ||||| |||||  |||||| |||||| |||||     
T  36624812 agtgtgtttagatgggataattgagaaattttgaagaatttagaattctaagga-attcaaatgattcaattcaattgctttcattcttaaatgttattg 36624910  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||| ||||||    
T  36624911 tttggatgaagtaat 36624925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 658
Target Start/End: Complemental strand, 13145132 - 13145056
Alignment:
Q  582 aagtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||| || ||||||||  ||| ||||||||||||||||||||||||| ||| |||||||  |||||||||    
T  13145132 aagtgtgtttgggtgaggtaattgggaaaatttaaagaatttaaaattctaggca-atttaaatgatttaattaaatt 13145056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 30444808 - 30444861
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    ||||||||||||||  |||||| | |||||||||||||||||||||||||||||    
T  30444808 agtgtgtttggatgaagtaatttggaaattttaaagaatttaaaattctaggca 30444861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 36189309 - 36189229
Alignment:
Q  275 tcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaagatgattca 355  Q
    |||| |||||| ||||| |||||| ||| | |||||| |||| |||||||| |||| | ||||||||||||||||| ||||    
T  36189309 tcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttca 36189229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 17443764 - 17443819
Alignment:
Q  37 aacaatatagcaaatataatatattcttatctttttaaatgacaacatcaatataa 92  Q
    ||||||||| |||||||||||| || |||||||||| ||||||| || ||||||||    
T  17443764 aacaatataacaaatataatatttttttatctttttgaatgacaccaacaatataa 17443819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 635
Target Start/End: Complemental strand, 23011935 - 23011888
Alignment:
Q  589 tttggatgtggtaattga-aaattttaaagaatttaaaattctaggca 635  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||    
T  23011935 tttggatgaggtaatttagaaattttaaagaatttaaaattctaggca 23011888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 36068022 - 36067980
Alignment:
Q  36 aaacaatatagcaaatataatata--ttcttatctttttaaat 76  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  36068022 aaacaatatagcaaatataatataagttcttatctttttaaat 36067980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 587 - 696
Target Start/End: Original strand, 1087852 - 1087961
Alignment:
Q  587 tgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttg 685  Q
    |||||| ||| ||||||||| ||||||||||||||||| |||| |||| | ||| ||||||| ||||||||||   || |||| |||||| | || ||||    
T  1087852 tgtttgaatgaggtaattgagaaattttaaagaatttagaattttagg-aaatttaaatgattcaattaaattacttttatttctaaatacttttgtttg 1087950  T
Q  686 tatggagtaat 696  Q
     ||||||||||    
T  1087951 gatggagtaat 1087961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 4438613 - 4438545
Alignment:
Q  33 aaaaaacaatatagcaaatataatata--ttcttatctttttaaatgacaacatcaatataagattctt 99  Q
    |||||| |||||| |||||||||||||  ||||||||||||| ||||| | || |||||||| ||||||    
T  4438613 aaaaaagaatataacaaatataatataaattcttatcttttttaatgataccaacaatataacattctt 4438545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 628
Target Start/End: Complemental strand, 29317240 - 29317199
Alignment:
Q  587 tgtttggatgtggtaattgaaaattttaaagaatttaaaatt 628  Q
    ||||||||||  ||||||||||||| ||||||||||||||||    
T  29317240 tgtttggatgaagtaattgaaaattctaaagaatttaaaatt 29317199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 598 - 633
Target Start/End: Complemental strand, 7079821 - 7079785
Alignment:
Q  598 ggtaattga-aaattttaaagaatttaaaattctagg 633  Q
    ||||||||| |||||||||||||||||||||||||||    
T  7079821 ggtaattgagaaattttaaagaatttaaaattctagg 7079785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 642
Target Start/End: Complemental strand, 7669183 - 7669123
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaa 642  Q
    |||||||||||||| ||||||||| |||||| |||||||||| || |||||| | ||||||    
T  7669183 agtgtgtttggatggggtaattgagaaatttcaaagaatttagaactctaggaaaattcaa 7669123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 347
Target Start/End: Complemental strand, 30432468 - 30432360
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatg 338  Q
    |||||||||| ||| |||||| | ||||||| | | |||| |||||| |||||||||||| ||| | |||||| |||  |||||| | |||| | |||||    
T  30432468 tattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatg 30432369  T
Q  339 ccacctaag 347  Q
    ||| |||||    
T  30432368 ccatctaag 30432360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 637 - 685
Target Start/End: Original strand, 35404342 - 35404390
Alignment:
Q  637 attcaaatgatacaattaaattgtcttcatttttaaatattattatttg 685  Q
    |||||||| || |||||||||||  ||||||||||||||||||| ||||    
T  35404342 attcaaatcattcaattaaattgatttcatttttaaatattattgtttg 35404390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 585 - 696
Target Start/End: Original strand, 37241163 - 37241274
Alignment:
Q  585 tgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatt 683  Q
    |||||||||||| ||||||||| ||||||| ||||||||| ||||||||  | |||||||| || |||||||||||| ||||||| ||||||||||| ||    
T  37241163 tgtgtttggatggggtaattgagaaattttgaagaatttagaattctagtta-attcaaattattcaattaaattgttttcatttctaaatattattgtt 37241261  T
Q  684 tgtatggagtaat 696  Q
    || ||||||||||    
T  37241262 tggatggagtaat 37241274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 22303390 - 22303503
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  ||| |||| ||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||  |||||| ||||||||||||     
T  22303390 agtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggta-attcaaatgattcaattaaattgctttcattcttaaatattattg 22303488  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  22303489 tttggatggagtaat 22303503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 346
Target Start/End: Complemental strand, 17225446 - 17225341
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatg 338  Q
    |||||||||| |||||||||||| ||||||||| | |||| |||||| |||||||||||||||||| |||||| |||  |||||||| |||  | |||||    
T  17225446 tattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--gagtatg 17225349  T
Q  339 ccacctaa 346  Q
    ||||||||    
T  17225348 ccacctaa 17225341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 32249651 - 32249726
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  32249651 agtgtgtttggatgaggtaatttgaaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 32249726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 582 - 696
Target Start/End: Complemental strand, 10315197 - 10315083
Alignment:
Q  582 aagtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatt 680  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| |||| |||| | ||||||||||| ||||| |||||  |||||| |||||| |||||    
T  10315197 aagtgtgtttggatggggtaattgagaaattttgaagaatttagaattataggga-attcaaatgattcaattcaattgctttcattcttaaatgttatt 10315099  T
Q  681 atttgtatggagtaat 696  Q
     |||| ||| ||||||    
T  10315098 gtttggatgaagtaat 10315083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 586 - 677
Target Start/End: Complemental strand, 32317217 - 32317127
Alignment:
Q  586 gtgtttggatgtggtaattgaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatatt 677  Q
    ||||||||||  ||||||||||||||||||||||||||||||| || ||| | |||||| || ||||| |||| ||||||||| ||||||||    
T  32317217 gtgtttggattaggtaattgaaaattttaaagaatttaaaattttaagca-agtcaaattattcaattgaattatcttcatttctaaatatt 32317127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 20320531 - 20320584
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  20320531 agtgtgtttggatgaggtaatttgaaaattttaaagaatttaaaattctaggca 20320584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 12480447 - 12480372
Alignment:
Q  583 agtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| |||||||| |||||||||||||||||| ||||||| ||| ||| ||||||| ||||||||||    
T  12480447 agtgtgtttggatgaggtaattggaaaattttaaagaatttagaattctaagca-atttaaatgattcaattaaatt 12480372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 581 - 692
Target Start/End: Complemental strand, 28490011 - 28489900
Alignment:
Q  581 taagtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattat 679  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||| ||| ||||||| ||| ||||||| ||||||||||   ||||||| | |||||| |    
T  28490011 taagtgtgtttggatgaggtaattagaaaattttaaggaatttagaatcctaggca-atttaaatgattcaattaaattacgttcatttctcaatatttt 28489913  T
Q  680 tatttgtatggag 692  Q
    | |||| ||||||    
T  28489912 tgtttggatggag 28489900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 41761746 - 41761821
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||| |||||| ||| ||||||| ||||||||||    
T  41761746 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattttaggca-atttaaatgattcaattaaatt 41761821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 584 - 658
Target Start/End: Complemental strand, 22304729 - 22304655
Alignment:
Q  584 gtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    ||||||||||||| ||||||||| ||||||||||||||||| |||||||| || ||| ||||||| ||||||||||    
T  22304729 gtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctagaca-atttaaatgattcaattaaatt 22304655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 668
Target Start/End: Original strand, 6771825 - 6771910
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcattt 668  Q
    |||||||||||||| | ||||||  ||||||||||||||||| ||||||| ||| ||||||||||| |||||||||| | |||||||    
T  6771825 agtgtgtttggatgagttaattgggaaattttaaagaatttagaattctatgca-attcaaatgattcaattaaattattttcattt 6771910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 28490454 - 28490378
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaa--attttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| |||||||||||   |||||||||||||||||||| ||||| ||| ||||||| ||||||||||    
T  28490454 agtgtgtttggatgaggtaattgaaatttttttaaagaatttaaaattcaaggca-atttaaatgattcaattaaatt 28490378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 12064320 - 12064373
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  12064320 agtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctaggca 12064373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 637 - 694
Target Start/End: Complemental strand, 18442995 - 18442938
Alignment:
Q  637 attcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggagta 694  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  18442995 attcaaatcattcaattaaattgtcttcatttttaaatatttttatttggatgaagta 18442938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 25935153 - 25935206
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  25935153 agtgtgtttggatgaggtaatttagaaattttaaagaatttaaaattctaggca 25935206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 696
Target Start/End: Original strand, 15270421 - 15270532
Alignment:
Q  585 tgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatt 683  Q
    |||||||| ||| |||||||| |||||||||||||||||| ||||||||| | ||| ||||||| |||||||| ||  ||||||| | |||||| || ||    
T  15270421 tgtgtttgaatgaggtaattggaaaattttaaagaatttagaattctaggta-attgaaatgattcaattaaaatgctttcatttctcaatatttttgtt 15270519  T
Q  684 tgtatggagtaat 696  Q
    || || |||||||    
T  15270520 tggatagagtaat 15270532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 17541886 - 17541961
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||| |||| || ||| ||||||| ||||||||||    
T  17541886 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaatcctagaca-atttaaatgattcaattaaatt 17541961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 582 - 696
Target Start/End: Original strand, 17492690 - 17492804
Alignment:
Q  582 aagtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatt 680  Q
    ||||||||||||||| ||||||| |||||||||||| ||||| | | | || ||| |||||||| ||  ||||| ||||||||||||| |||||||| ||    
T  17492690 aagtgtgtttggatgaggtaattagaaaattttaaaaaattttagaatataagca-attcaaattattaaattacattgtcttcatttctaaatattttt 17492788  T
Q  681 atttgtatggagtaat 696  Q
     ||||  |||||||||    
T  17492789 gtttggctggagtaat 17492804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 583 - 633
Target Start/End: Complemental strand, 35111758 - 35111707
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctagg 633  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  35111758 agtgtgtttggatggggtaattgagaaattttaaagaatttagaattctagg 35111707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 656
Target Start/End: Original strand, 33995446 - 33995519
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaa 656  Q
    ||||||||||||||  |||||||| ||||||||||||| ||| |||| |||||| ||||||||||| ||||||||    
T  33995446 agtgtgtttggatgatgtaattgacaaattttaaagaaattagaattttaggca-attcaaatgattcaattaaa 33995519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 19533769 - 19533822
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||| ||| ||||||| | |||||||||||||||||||||||||||||    
T  19533769 agtgtgtttgaatgaggtaatttggaaattttaaagaatttaaaattctaggca 19533822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 927848 - 927773
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||| ||| ||||||||| ||||||||||||||||| |||||||| || ||| |||||||  |||||||||    
T  927848 agtgtgtttgaatgaggtaattgagaaattttaaagaatttagaattctagaca-atttaaatgatttaattaaatt 927773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 14831637 - 14831565
Alignment:
Q  275 tcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    |||| |||||| |||||||||||| ||| |||||||| |||  |||||||| |||| | ||||||||||||||    
T  14831637 tcatctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 14831565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 5856401 - 5856444
Alignment:
Q  37 aacaatatagcaaatataatatattcttatctttttaaatgaca 80  Q
    ||||||||| ||||||| ||| ||||||||||||||||||||||    
T  5856401 aacaatataacaaatatcataaattcttatctttttaaatgaca 5856444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 685
Target Start/End: Complemental strand, 11409723 - 11409622
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattat 682  Q
    |||||| ||||| | ||| |||||||| |||||| || | ||||||||  ||| ||||||||||| ||||  |||||||||| ||||||||| ||||| |    
T  11409723 agtgtgattggacgaggtgattgaaaaatttaaaaaaatcaaaattcttagca-attcaaatgattcaatagaattgtcttcgtttttaaatgttattgt 11409625  T
Q  683 ttg 685  Q
    |||    
T  11409624 ttg 11409622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 692
Target Start/End: Original strand, 22304736 - 22304845
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||| ||| |||| ||||||||  ||||||||||||||||| ||| ||||||| ||| ||||||| ||||||||||   ||||||| | |||||| ||     
T  22304736 agtgtattttgatgaggtaattgggaaattttaaagaatttagaatcctaggca-atttaaatgattcaattaaattactttcatttctcaatatttttg 22304834  T
Q  682 tttgtatggag 692  Q
    |||| ||||||    
T  22304835 tttggatggag 22304845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 631
Target Start/End: Original strand, 13390964 - 13391013
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattcta 631  Q
    |||||||||||||| ||||||||  ||||||||||||||||| |||||||    
T  13390964 agtgtgtttggatgaggtaattgggaaattttaaagaatttagaattcta 13391013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 15580000 - 15580076
Alignment:
Q  583 agtgtgtttggatgtgg-taatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| || ||||| | |||||||||| ||||||||||||||| || ||| ||||||| ||||||||||    
T  15580000 agtgtgtttggatgagggtaattaggaaattttaaaaaatttaaaattctagaca-atttaaatgattcaattaaatt 15580076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 347
Target Start/End: Original strand, 40887999 - 40888112
Alignment:
Q  234 agagatattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgc 333  Q
    |||| |||||||||| ||| |||||| | || ||||   | |||| |||||| |||||||||||| ||| | |||||| |||  |||||||| |||| |     
T  40887999 agaggtattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagt 40888098  T
Q  334 gtatgccacctaag 347  Q
    ||||||||||||||    
T  40888099 gtatgccacctaag 40888112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 355
Target Start/End: Original strand, 1815678 - 1815794
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatg 338  Q
    |||||||||| ||| |||||| | ||||||| | | |||| |||||| |||||||||||| ||| | |||||| | |  |||| ||| |||| | |||||    
T  1815678 tattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatg 1815777  T
Q  339 ccacctaagatgattca 355  Q
     ||||||||||| ||||    
T  1815778 tcacctaagatggttca 1815794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 240 - 355
Target Start/End: Complemental strand, 12164382 - 12164264
Alignment:
Q  240 attttagtactttcacatcacaccatcacctcctctcat---atcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgta 336  Q
    ||||||||| ||||||||||||||||||||  ||| |||    |||||| |||||||||||| |||||  ||||| |||  ||| || ||||||   ||     
T  12164382 attttagtaatttcacatcacaccatcaccctctcccatctcttcttctttcaatgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtg 12164283  T
Q  337 tgccacctaagatgattca 355  Q
    |||||||||||||| ||||    
T  12164282 tgccacctaagatggttca 12164264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 14001111 - 14001178
Alignment:
Q  34 aaaaacaatatagcaaatataatata--ttcttatctttttaaatgacaacatcaatataagattctt 99  Q
    ||||| |||||| |||||||||||||  ||||||||||||| ||||||| || ||| |||| ||||||    
T  14001111 aaaaaaaatataacaaatataatataaattcttatctttttgaatgacatcaacaaaataacattctt 14001178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 33404534 - 33404606
Alignment:
Q  275 tcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    |||| |||||| |||||||||||| ||| | |||||| |||  |||||||| |||||| ||||| ||||||||    
T  33404534 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaag 33404606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 37091134 - 37091059
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||| | |||| |||||||||||| || |||||| | ||| ||||||| ||||||||||    
T  37091134 agtgtgtttggatgaggtaattggtaaatcttaaagaatttagaactctaggta-attaaaatgattcaattaaatt 37091059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 182 - 347
Target Start/End: Original strand, 29820304 - 29820469
Alignment:
Q  182 aaagataggtagacaccatttcttaagtacctctcatg---atacccc-atgtggcagagatattttagtactttcacatcacaccatcacctcct-ctc 276  Q
    ||||||||||||||||| ||| ||| ||||||||||||   | ||||| ||||| |||||||||||||||| ||||| |     |||||||| ||| |||    
T  29820304 aaagataggtagacacccttttttatgtacctctcatgtacacacccccatgtgacagagatattttagtaatttcaaa-----ccatcacccccttctc 29820398  T
Q  277 atatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    || |||||| | ||||||||||  |||| ||||||||||| |||||||| |||||| ||||||||||||||    
T  29820399 atctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaag 29820469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 37054943 - 37054830
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  ||| |||| ||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||  |||||| ||||||||||||     
T  37054943 agtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggta-attcaaatgattcaattaaattgctttcattcttaaatattattg 37054845  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  37054844 tttggatggagtaat 37054830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 607 - 696
Target Start/End: Complemental strand, 30767075 - 30766987
Alignment:
Q  607 aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggagtaat 696  Q
    ||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||| |||||| |||||||||||| |||| ||||||||||    
T  30767075 aaattttgaagaatttagaattctaggta-attcaaatgattcaattaaattgttttcattcttaaatattattgtttggatggagtaat 30766987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 692
Target Start/End: Complemental strand, 2105277 - 2105168
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  |||||||| ||||||| ||||||||| ||||||||| | ||| ||||||| |||||||||||  |||||| ||||||||||||     
T  2105277 agtgtgtttggatggagtaattgagaaattttgaagaatttataattctaggta-atttaaatgattcaattaaattggtttcattcttaaatattattg 2105179  T
Q  682 tttgtatggag 692  Q
    |||| ||||||    
T  2105178 tttggatggag 2105168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 42005475 - 42005588
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  ||| |||| ||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||  |||||| ||||||| ||||     
T  42005475 agtgtgtttggatggagtatttgagaaattttgaagaatttagaattctaggta-attcaaatgattcaattaaattgctttcattcttaaatactattg 42005573  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  42005574 tttggatggagtaat 42005588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 50168193 - 50168306
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||| ||||||||||||||  | |||||| |||| ||| ||||  | |||||||||||||||||||| |||||||| ||     
T  50168193 agtgtgtttggatgaggtaattgagaaattttaaagaatcgagaattcttggca-atttaaatacttcaattaaattgtcttcatttctaaatattcttg 50168291  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  50168292 tttggatggagtaat 50168306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 585 - 668
Target Start/End: Original strand, 34396148 - 34396231
Alignment:
Q  585 tgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcattt 668  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||||||||| ||| ||||||| |||||||||| | |||||||    
T  34396148 tgtgtttggatgaggtaattggaaaattttaaagagtttaaaattctaggca-atttaaatgattcaattaaattcttttcattt 34396231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 346
Target Start/End: Complemental strand, 53638264 - 53638157
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatg 338  Q
    |||||||| | ||| |||||||| ||||||| |||||||| |||||| || ||||||||  ||||| |||| |||||  ||||||||||||| | |||||    
T  53638264 tattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgtatg 53638165  T
Q  339 ccacctaa 346  Q
    ||||||||    
T  53638164 ccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 28181800 - 28181913
Alignment:
Q  583 agtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||| | |||||||| |||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||   ||||||| | |||| | ||     
T  28181800 agtgtgtttggacgaggtaattggaaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaattactttcatttctcaatacttttg 28181898  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  28181899 tttggatggagtaat 28181913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 47767973 - 47767860
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  ||| |||| ||||||| ||||||||| ||||| ||  | ||||||||||| |||||||||||  |||||| ||||||||||||     
T  47767973 agtgtgtttggatggagtatttgagaaattttgaagaatttagaattcaagata-attcaaatgattcaattaaattgctttcattcttaaatattattg 47767875  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  47767874 tttggatggagtaat 47767860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 8762334 - 8762281
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  8762334 agtgtgtttggatgaggtaatttgaaaattttaaagaatttaaaattctaggca 8762281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 26547524 - 26547412
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattat 682  Q
    |||||||||||||| ||||||||| |||||| | ||||||| |||| |||| | ||||||||||| ||||| |||||  |||||| |||||| ||||| |    
T  26547524 agtgtgtttggatggggtaattgagaattttgatgaatttagaattttaggga-attcaaatgattcaattcaattgctttcattcttaaatgttattgt 26547426  T
Q  683 ttgtatggagtaat 696  Q
    ||| ||| ||||||    
T  26547425 ttggatgaagtaat 26547412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 34089123 - 34089048
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    ||||||||||||||  |||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  34089123 agtgtgtttggatgatgtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 34089048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 36397513 - 36397588
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||| || ||| ||||||| ||||||||||    
T  36397513 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctagaca-atttaaatgattcaattaaatt 36397588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 587 - 658
Target Start/End: Complemental strand, 48948125 - 48948054
Alignment:
Q  587 tgtttggatgtggtaattgaaaa-ttttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||| |||||||||||| |||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  48948125 tgtttggatgaggtaattgaaaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 48948054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 53469953 - 53470028
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||| | ||| ||||||| ||||||||||    
T  53469953 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaattctaggta-atttaaatgattcaattaaatt 53470028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 605 - 696
Target Start/End: Original strand, 13339116 - 13339206
Alignment:
Q  605 gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggagtaat 696  Q
    ||||||||| ||||||||| |||| |||||| ||| ||||||| |||||||||| | || ||||||||||||| || |||| ||||||||||    
T  13339116 gaaaattttgaagaatttagaattttaggca-atttaaatgattcaattaaattttttttatttttaaatatttttgtttggatggagtaat 13339206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 587 - 696
Target Start/End: Original strand, 645741 - 645850
Alignment:
Q  587 tgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttg 685  Q
    |||||||||| |||||||| |||||||||||||||||| ||||| | | | ||||||||||| | |||||||| | ||||||| | |||| | || ||||    
T  645741 tgtttggatgaggtaattggaaaattttaaagaatttagaattccaagta-attcaaatgattcgattaaattattttcatttctcaatacttttgtttg 645839  T
Q  686 tatggagtaat 696  Q
    |||||||||||    
T  645840 tatggagtaat 645850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 7302940 - 7302827
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||   ||| |||| ||||||| ||||||||| ||||||||  | ||||| ||||| |||||||||||  |||||| ||||||||||||     
T  7302940 agtgtgtttggattgagtatttgagaaattttgaagaatttagaattctagata-attcatatgattcaattaaattgctttcattcttaaatattattg 7302842  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  7302841 tttggatggagtaat 7302827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 692
Target Start/End: Original strand, 24241713 - 24241822
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||| |||| || ||| ||||||| ||||||||||   ||||||| | |||||| ||     
T  24241713 agtgtgtttggatgaggtaattgagaaattttaaagaatttagaatcctagaca-atttaaatgattcaattaaattactttcatttctcaatatttttg 24241811  T
Q  682 tttgtatggag 692  Q
    |||| ||||||    
T  24241812 tttggatggag 24241822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 668
Target Start/End: Original strand, 43863488 - 43863573
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcattt 668  Q
    |||||||||||| | ||||||||| ||||||||||||||||| ||||||||| | ||| ||||||| |||||||||| | |||||||    
T  43863488 agtgtgtttggacgaggtaattgagaaattttaaagaatttagaattctaggta-atttaaatgattcaattaaattattttcattt 43863573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 19476024 - 19475971
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  19476024 agtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctaggca 19475971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 584 - 668
Target Start/End: Original strand, 48824637 - 48824721
Alignment:
Q  584 gtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcattt 668  Q
    ||||||||||||  |||||||| |||||||||||||||||| |||| |||||| ||| ||||||| |||||||||| | |||||||    
T  48824637 gtgtgtttggataaggtaattggaaaattttaaagaatttagaattttaggca-atttaaatgattcaattaaattattttcattt 48824721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 671190 - 671265
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||| ||| || ||| ||||||| ||||||||||    
T  671190 agtgtgtttggatgaggtaattgagaaattttaaagaatataaaattatagaca-atttaaatgattcaattaaatt 671265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 21731466 - 21731391
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaattttaa-agaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| ||||||||| || ||||| |||||||||||||||||||| ||| |||| || ||||||||||    
T  21731466 agtgtgtttggatgaggtaattgataaatttaagagaatttaaaattctaggca-atttaaataattcaattaaatt 21731391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 38231386 - 38231314
Alignment:
Q  275 tcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    ||||||||||| |||||||||||| ||||| |||||| |||  |||||||| |||| | ||||||||||||||    
T  38231386 tcatatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 38231314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 16738275 - 16738229
Alignment:
Q  33 aaaaaacaatatagcaaatataatatattcttatctttttaaatgaca 80  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||    
T  16738275 aaaaaacaatatagcaaatataata-attcttatctttttgaatgaca 16738229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 21307113 - 21307226
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||| | ||||||||||||||||| |||| |||  | ||| ||||||| |||||||| ||  ||||||| | |||||| ||     
T  21307113 agtgtgtttggatgaggtaattgggaaattttaaagaatttagaattttagata-attgaaatgattcaattaaaatgctttcatttctcaatatttttg 21307211  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  21307212 tttggatggagtaat 21307226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 607 - 677
Target Start/End: Complemental strand, 46636371 - 46636302
Alignment:
Q  607 aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatatt 677  Q
    ||||||||||   ||| |||||||||||| ||||||||||| |||||||||||  ||||||||||||||||    
T  46636371 aaattttaaattttttgaaattctaggca-attcaaatgattcaattaaattgcattcatttttaaatatt 46636302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 52527557 - 52527444
Alignment:
Q  583 agtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| |||||||| ||||||||||| |||||| |||||||   | ||| ||||||| ||||||||||   || ||||||||||| | ||     
T  52527557 agtgtgtttggatgaggtaattggaaaattttaaaaaatttagaattctaaaaa-atttaaatgattcaattaaattacttttatttttaaatacttttg 52527459  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  52527458 tttggatggagtaat 52527444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 33871766 - 33871819
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    ||||||| |||||| ||||||| | |||||||||||||||||||||||||||||    
T  33871766 agtgtgtgtggatgaggtaatttggaaattttaaagaatttaaaattctaggca 33871819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 47714484 - 47714431
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| | |||||||||||||||| ||||||||||||    
T  47714484 agtgtgtttggatgaggtaatttggaaattttaaagaatttcaaattctaggca 47714431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 692
Target Start/End: Original strand, 6836590 - 6836671
Alignment:
Q  610 ttttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggag 692  Q
    |||||||||||||| |||| |||||| ||||||||||| |||||||| ||  ||||||| | |||||| || |||| ||||||    
T  6836590 ttttaaagaatttagaattttaggca-attcaaatgattcaattaaaatgctttcatttatcaatatttttgtttggatggag 6836671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 692
Target Start/End: Complemental strand, 7977098 - 7976989
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||| | ||||||||||||||||  ||| ||||||| ||| ||||||| ||||| ||||   ||||||| | |||||| ||     
T  7977098 agtgtgtttggatgaggtaattgggaaattttaaagaatttcgaatcctaggca-atttaaatgattcaattcaattactttcatttctcaatatttttg 7977000  T
Q  682 tttgtatggag 692  Q
    |||| ||||||    
T  7976999 tttggatggag 7976989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 668
Target Start/End: Original strand, 38506486 - 38506571
Alignment:
Q  583 agtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcattt 668  Q
    |||||||||| |||  ||||||| |||||||||||||||||| |||| |||||| ||| ||||||| || ||||| ||| |||||||    
T  38506486 agtgtgtttgaatgaagtaattggaaaattttaaagaatttagaattttaggca-atttaaatgattcatttaaaatgttttcattt 38506571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 628
Target Start/End: Original strand, 54761428 - 54761474
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaatt 628  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||||    
T  54761428 agtgtgtttggatgaggtaatttgaaaattttacagaatttaaaatt 54761474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 696
Target Start/End: Complemental strand, 55460785 - 55460700
Alignment:
Q  610 ttttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggagtaat 696  Q
    |||| ||||||||| |||| |||||| ||||||||| | ||||||||||| |||||||  |||||||  || |||| ||||||||||    
T  55460785 tttttaagaatttagaattttaggca-attcaaatgtttcaattaaattgccttcattactaaatatatttgtttggatggagtaat 55460700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 675
Target Start/End: Original strand, 44288026 - 44288118
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaata 675  Q
    |||||||||||| | ||||||| | ||||||| || |||||| |||| ||| || ||||||| ||| ||||||||||| |||||||| ||||||    
T  44288026 agtgtgtttggacgaggtaattaggaaattttgaaaaatttataattttagaca-attcaaaagattcaattaaattgccttcatttctaaata 44288118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 607 - 692
Target Start/End: Original strand, 47283827 - 47283911
Alignment:
Q  607 aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggag 692  Q
    ||||||| |||||||||||||| || | | ||| ||||||| || ||||||||  |||||| |||||||||||| |||| ||||||    
T  47283827 aaattttgaagaatttaaaattttaagta-atttaaatgattcatttaaattgctttcattcttaaatattattgtttggatggag 47283911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 22894773 - 22894701
Alignment:
Q  275 tcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    |||| |||||| |||||||||||| ||| | |||||| |||  |||||||| |||| | ||||||||||||||    
T  22894773 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 22894701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 670
Target Start/End: Original strand, 25547018 - 25547077
Alignment:
Q  610 ttttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcattttt 670  Q
    ||||| ||||||||||||| ||| || |||||||| || ||||| ||||||||||||||||    
T  25547018 ttttagagaatttaaaattttagaca-attcaaattattcaattgaattgtcttcattttt 25547077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 587 - 658
Target Start/End: Complemental strand, 28092206 - 28092136
Alignment:
Q  587 tgtttggatgtggtaattg-aaaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||| | |||||| ||||||||||||||||| |||||||||||| ||| | ||||| ||||||||||    
T  28092206 tgtttggatgagctaattggaaaattttaaagaattt-aaattctaggca-atttatatgattcaattaaatt 28092136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 29460753 - 29460681
Alignment:
Q  275 tcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    |||| |||||| |||||||||||| ||||| ||||||  ||  |||||||| |||| | ||||||||||||||    
T  29460753 tcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaag 29460681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 29471605 - 29471533
Alignment:
Q  275 tcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    |||| |||||| |||||||||||| ||||| ||||||  ||  |||||||| |||| | ||||||||||||||    
T  29471605 tcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaag 29471533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 658
Target Start/End: Original strand, 35279472 - 35279547
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||||| || |||||  ||||||||||||||||| ||||||| | | ||| ||||||| ||||||||||    
T  35279472 agtgtgtttggatgaggcaattgggaaattttaaagaatttagaattctaagta-atttaaatgattcaattaaatt 35279547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 36370436 - 36370508
Alignment:
Q  275 tcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    |||| |||||| |||||||||||||||||| |||||| |||  |||||||| |||  | ||||| ||||||||    
T  36370436 tcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaag 36370508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 355
Target Start/End: Original strand, 46112006 - 46112122
Alignment:
Q  239 tattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatg 338  Q
    |||||||||| ||| |||||| | |||||||   | |||| |||||| |||||||||||| ||||| |||||| |||  |||| ||| |||  | |||||    
T  46112006 tattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatg 46112105  T
Q  339 ccacctaagatgattca 355  Q
     ||||||||||| ||||    
T  46112106 tcacctaagatggttca 46112122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 179 - 347
Target Start/End: Complemental strand, 14023124 - 14022955
Alignment:
Q  179 gaaaaagataggtagacaccatttcttaagtacctctcatg-ataccccatgtggcagagatattttagtactttcacatcacaccatcacctcctctca 277  Q
    |||||||||||||||||||| ||| |||   ||||| |||| | ||| ||||||  || | |||||||||| |||||||||||| | ||||| | | |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  278 tatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    | |||||| |||||||||||| ||||| |||||| |||  |||||||| |||| | ||||||||||||||    
T  14023024 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 14022955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 15615922 - 15616035
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||  |||||| ||||||||||  ||||||||||   ||||||| | |||||| ||     
T  15615922 agtgtgtttggatgaggtaattgataaattttaaagaatttaaaatattaggca-attcaaatgaatcaattaaattactttcatttctcaatatttttg 15616020  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  15616021 tttggatggagtaat 15616035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 34364952 - 34364899
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  34364952 agtgtgtttggatgaggtaatttgaaaattttaaagaatttaaaattctaggca 34364899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 8475676 - 8475601
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    ||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  8475676 agtgtgtttagatgaggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 8475601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 350
Target Start/End: Complemental strand, 24208637 - 24208462
Alignment:
Q  176 aaggaaaaagataggtagacaccatttcttaagtacctctcatg-ataccccatgtggcagagatattttagtactttcacatcacaccatcacctcctc 274  Q
    ||||||||||||||||||||| | ||| |||   |||||||||  | ||| ||||||  || | |||||||||| |||||||||||| | |||||   |     
T  24208637 aaggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttt 24208538  T
Q  275 tcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaagatg 350  Q
    |||| |||||| |||||||||||| |||||||||||| |||  |||||||| |||  | |||| ||||||| ||||    
T  24208537 tcatctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatg 24208462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 34244845 - 34244898
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  34244845 agtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctaggca 34244898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 1369023 - 1368948
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    |||||||||||| | ||||||||| ||||| ||||||||||||||||||||| | ||| ||||||| ||||||||||    
T  1369023 agtgtgtttggacgaggtaattgagaaattataaagaatttaaaattctaggta-atttaaatgattcaattaaatt 1368948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 582 - 696
Target Start/End: Complemental strand, 31413408 - 31413294
Alignment:
Q  582 aagtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatt 680  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||| | |||||||||||  |||| | |||  || ||| |||||| |||||    
T  31413408 aagtgtgtttggatggggtaattgagaaattttgaagaatttagaattctaggga-attcaaatgattaaattcagttgctttaattcttaaatgttatt 31413310  T
Q  681 atttgtatggagtaat 696  Q
     |||| ||| ||||||    
T  31413309 gtttggatgaagtaat 31413294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 656
Target Start/End: Complemental strand, 10105553 - 10105480
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaa 656  Q
    |||||||||||||| ||||||||| ||||||||||||||||| | || |||||| |||| |||||| ||||||||    
T  10105553 agtgtgtttggatgaggtaattgagaaattttaaagaatttagacttgtaggca-attccaatgattcaattaaa 10105480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 583 - 632
Target Start/End: Complemental strand, 13487483 - 13487433
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctag 632  Q
    |||||||||||||| ||||||| | ||||||||||||||||||||||||||    
T  13487483 agtgtgtttggatgaggtaatttggaaattttaaagaatttaaaattctag 13487433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 582 - 679
Target Start/End: Complemental strand, 15833155 - 15833058
Alignment:
Q  582 aagtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattat 679  Q
    |||||||||||||||  |||||||| ||||||| ||||||| | |||| |||| | |||||||||||  ||||||||||  |||||| |||||||||||    
T  15833155 aagtgtgtttggatggagtaattgagaaattttgaagaattcagaattttaggta-attcaaatgatttaattaaattgctttcattcttaaatattat 15833058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 659
Target Start/End: Complemental strand, 1195851 - 1195775
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattg 659  Q
    |||||||||| ||| ||||||||| |||||||| ||||||| |||||||||||| ||| |||| || |||||||||||    
T  1195851 agtgtgtttgaatgaggtaattgagaaattttagagaatttgaaattctaggca-atttaaataattcaattaaattg 1195775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 29889298 - 29889352
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaatttt--aaagaatttaaaattctaggca 635  Q
    |||||||||||||| |||||||  |||||||  ||||||||||||||||||||||    
T  29889298 agtgtgtttggatgaggtaatttgaaattttttaaagaatttaaaattctaggca 29889352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 647
Target Start/End: Original strand, 724813 - 724877
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgat 647  Q
    |||||||||||||| ||||||||| || |||| ||||||||| ||||||||| | |||||||||||    
T  724813 agtgtgtttggatgaggtaattgagaattttttaagaatttagaattctaggta-attcaaatgat 724877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 8866861 - 8866925
Alignment:
Q  37 aacaatatagcaaatataatata--ttcttatctttttaaatgacaacatcaatataagattctt 99  Q
    ||||||||| |||||||||||||  ||||||||||||| ||||||| || ||||| || ||||||    
T  8866861 aacaatataacaaatataatataaattcttatcttttttaatgacaccaacaataaaacattctt 8866925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 3987003 - 3987075
Alignment:
Q  275 tcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgtatgccacctaag 347  Q
    |||| |||||| |||||||||||| ||| | |||||| |||  |||||||| |||| | ||||||||||||||    
T  3987003 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 3987075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 4022 - 4135
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaatttta-aagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  ||| |||||| ||||  ||||||||| |||||||||  |||||||||||| |||||||||||  |||||| ||||||||||||     
T  4022 agtgtgtttggatggagtatttgaaattttttgaagaatttagaattctaggt-tattcaaatgattcaattaaattgctttcattcttaaatattattg 4120  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  4121 tttggatggagtaat 4135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 696
Target Start/End: Original strand, 4666 - 4779
Alignment:
Q  583 agtgtgtttggatgtggtaattgaaaatttta-aagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  ||| |||||| ||||  ||||||||| |||||||||  |||||||||||| |||||||||||  |||||| ||||||||||||     
T  4666 agtgtgtttggatggagtatttgaaattttttgaagaatttagaattctaggt-tattcaaatgattcaattaaattgctttcattcttaaatattattg 4764  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  4765 tttggatggagtaat 4779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 607 - 696
Target Start/End: Original strand, 15964 - 16052
Alignment:
Q  607 aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggagtaat 696  Q
    ||||||| ||||||||| ||||||||| | ||| ||||||| |||||||||||  |||||| |||||||||||| |||| || |||||||    
T  15964 aaattttgaagaatttagaattctaggta-atttaaatgattcaattaaattgctttcattcttaaatattattgtttggattgagtaat 16052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 658
Target Start/End: Complemental strand, 7684 - 7624
Alignment:
Q  598 ggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  7684 ggtaattgagaaattttaaagaatttagaattctaggca-atttaaatgattcaattaaatt 7624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 4566 - 4453
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||   ||||||  ||||||||||||||||| ||||||||||| ||| ||||||| || ||||| ||  ||||||| | |||| | ||     
T  4566 agtgtgtttggatgaactaattgggaaattttaaagaatttagaattctaggca-atttaaatgattcatttaaaatgctttcatttctcaatacttttg 4468  T
Q  682 tttgtatggagtaat 696  Q
    |||| ||||||||||    
T  4467 tttggatggagtaat 4453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 347
Target Start/End: Complemental strand, 6849 - 6739
Alignment:
Q  237 gatattttagtactttcacatcacaccatcacctcctctcatatcttctatcaatgtttttgtcacatatcacaattgtaagtgggtgttaaagtgcgta 336  Q
    ||||||| |||| ||| |||||| | |||||||   | |||| |||||| |||||||||||| ||| | |||||| |||  |||||||| |||| | |||    
T  6849 gatatttaagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgta 6750  T
Q  337 tgccacctaag 347  Q
    |||||||||||    
T  6749 tgccacctaag 6739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 692
Target Start/End: Original strand, 49838 - 49947
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattatta 681  Q
    ||||||||||||||  |||||||| ||||||| ||||||||| ||||  ||| | | ||||||||| ||||||||||   ||||||  |||||||||||     
T  49838 agtgtgtttggatggagtaattgagaaattttgaagaatttagaatttaaggta-actcaaatgattcaattaaattaatttcattcctaaatattattg 49936  T
Q  682 tttgtatggag 692  Q
    |||| ||||||    
T  49937 tttggatggag 49947  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 607 - 696
Target Start/End: Original strand, 19334 - 19422
Alignment:
Q  607 aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaattgtcttcatttttaaatattattatttgtatggagtaat 696  Q
    ||||||||||||||||| |||| |||||| ||| ||||||| ||||||||||   ||||||| | |||| | || |||| ||||||||||    
T  19334 aaattttaaagaatttagaattttaggca-atttaaatgattcaattaaattactttcatttctcaatacttttgtttggatggagtaat 19422  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 11377 - 11324
Alignment:
Q  583 agtgtgtttggatgtggtaatt-gaaaattttaaagaatttaaaattctaggca 635  Q
    |||||||||||||| ||||||| | ||||| |||||||||||||||| ||||||    
T  11377 agtgtgtttggatgaggtaatttggaaattgtaaagaatttaaaattttaggca 11324  T

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Target: scaffold0417 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 584 - 631
Target Start/End: Original strand, 11499 - 11547
Alignment:
Q  584 gtgtgtttggatgtggtaattg-aaaattttaaagaatttaaaattcta 631  Q
    ||||||||||||| |||| ||| |||||||||||||||||| |||||||    
T  11499 gtgtgtttggatgaggtatttggaaaattttaaagaatttagaattcta 11547  T

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Target: scaffold0318 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 3404 - 3329
Alignment:
Q  583 agtgtgtttggatgtggtaattga-aaattttaaagaatttaaaattctaggcatattcaaatgatacaattaaatt 658  Q
    ||||| |||||||| ||||||||| ||||||||||||||||| |||| |||  | ||| ||||||| ||||||||||    
T  3404 agtgtctttggatgaggtaattgagaaattttaaagaatttagaattttagtta-atttaaatgattcaattaaatt 3329  T

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