View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_65 (Length: 384)
Name: NF1304_low_65
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 2 - 371
Target Start/End: Original strand, 28896860 - 28897228
Alignment:
| Q |
2 |
accaatatcagaaacagcaggttgaagttcagtcagagagagtttaccatctttatctctatccaactcttgaaacttatggttcacaaagttactaaaa |
101 |
Q |
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| T |
28896860 |
accaatatcagaaacagcaggttgaagttcagtcagagagagtttaccatctttatctctatccaactcttgaaacttatggttcacaaagttactaaaa |
28896959 |
T |
|
| Q |
102 |
acatctttgtttccaactaactccataatattagaaccatctagaacctctactgcgtttccaccaccaccaccactttttctcttaactgaaccactct |
201 |
Q |
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| T |
28896960 |
acatctttgtttccaactaactccataatattagaaccatctagaacctctactgcgtttccaccaccaccaccactttttctcttaactgaaccactct |
28897059 |
T |
|
| Q |
202 |
ccattgtgaatcctgtgactcacctttctctttttctttgctactctcgtgacactcacacgagttaaaagtgttgagaacttactacttgatattctat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28897060 |
ccattgtgaatcctgtgactcacctttctctttttctttgctactctcgtgacactcacacgagtt-aaagtgttgagaacttactacttgatattctat |
28897158 |
T |
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| Q |
302 |
actatttctctctcaaaatattcagtttagtttcaactttttcaattcaattcaactactactttgcttc |
371 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28897159 |
actatttctgtctcaaaatattcagtttagtttcaactttttcaattcaatttaactactactttgcttc |
28897228 |
T |
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