View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_68 (Length: 381)
Name: NF1304_low_68
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 11815935 - 11815814
Alignment:
| Q |
31 |
taaagttggaacattccttccttttggagcaggaagtaggcactgtcctggaagtgacttggctaaaattgaaatatccatatttctacattatttcctt |
130 |
Q |
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| T |
11815935 |
taaagttggaacattccttccttttggagcaggaagtaggcactgtcctgggagtgacttggctaaaattgaaatatccatttttctacattatttcctt |
11815836 |
T |
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| Q |
131 |
aataattacaagtgagctctcg |
152 |
Q |
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| T |
11815835 |
aataattacaagtgagctctcg |
11815814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 11800081 - 11799983
Alignment:
| Q |
32 |
aaagttggaacattccttccttttggagcaggaagtaggcactgtcctggaagtgacttggctaaaattgaaatatccatatttctacattatttcctt |
130 |
Q |
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| T |
11800081 |
aaagttggaacctttattccttttggagcaggaagtatgcattgtcctgcgagtgacttggcaaaacctgaaatttttgtatttctacattatttcctt |
11799983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 11815347 - 11815285
Alignment:
| Q |
246 |
ttaacttttgctgttaaattaatttcatagaaaagaattaattagtttgaaatcaagctcaattttt |
312 |
Q |
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| T |
11815347 |
ttaatttttgctgttaaattaatttcatagaaagg----aattagtttgaaatcaagctcaattttt |
11815285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 331 - 372
Target Start/End: Complemental strand, 11815288 - 11815247
Alignment:
| Q |
331 |
ttttgtacaggcttgagatagtgaatccgaaatgtcctatga |
372 |
Q |
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| T |
11815288 |
ttttgtacaggcttgagatagtgaatccagaatgtcctatga |
11815247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 37436034 - 37436125
Alignment:
| Q |
38 |
ggaacattccttccttttggagcaggaagtaggcactgtcctggaagtgacttggctaaaattgaaatatccatatttctacattatttcct |
129 |
Q |
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| T |
37436034 |
ggaacctttcttccttttggagcaggaagtaggctctgtcctggagccgacttagcaaaacttgaaatttctatatttcttcattatttcct |
37436125 |
T |
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