View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_81 (Length: 338)
Name: NF1304_low_81
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_81 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 33189330 - 33189505
Alignment:
| Q |
150 |
ttagaatttgctcaacattttggattatgggtggattctttgaataaattgttgctttataattacttgagtttcaaagagtgtaatatttgacattcaa |
249 |
Q |
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| T |
33189330 |
ttagaatttgctcaacattttggattatggttggattctttgaataaattgttgctttataattacttgagtttcaaagagtgtaatatttgacattcaa |
33189429 |
T |
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| Q |
250 |
atttcttaatttcgaa------tgtgtacttggtccttttttcttggttgagttttgtttctcatagaatatgcat |
319 |
Q |
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| T |
33189430 |
atttcttaattttgaatgtgtctgtgtacttggttcttttttcttggttgagttttgtttctcatagaatatgcat |
33189505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 33188664 - 33188781
Alignment:
| Q |
29 |
actaacatattgtataatgttaataattgtggcaagtgtaacaaaaagtgtaaacgtgggattccttgtagaattgggttttgtgggtatgcatgaaatt |
128 |
Q |
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| T |
33188664 |
actaacatattgtataatgttaataattgtggcaagtgtaacaaaaagtgtaaacgtgggattccttgtagaattgggttttgtgggtatgcatgaaatt |
33188763 |
T |
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| Q |
129 |
ttatgaaactatactaga |
146 |
Q |
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| T |
33188764 |
ttatgaaactatactaga |
33188781 |
T |
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