View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_83 (Length: 336)
Name: NF1304_low_83
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 42176066 - 42176298
Alignment:
| Q |
11 |
gatgaagaagaaactgaaacagtgtttttggattaaatatctctccaaatg--atgaatgatgaaataggtgtaatgtgggagagaaatattgagaatac |
108 |
Q |
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| T |
42176066 |
gatgaagaagaaactgaaatagtgtttttggattaaatatctctccaagtactatgaatgatgaaataggtgtaatgtgggagagaaatattgagaatac |
42176165 |
T |
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| Q |
109 |
tacatataaatagaccaaatactgatgaggtggcactctcccaaagtttaaaggcttattggatttatcaaattgtcccatttgaaggtaaaattggaaa |
208 |
Q |
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| T |
42176166 |
tgcatataaatagaccaaatactgatgaggtggcactctcccaaagtttaaaggtttattggatttatcaaattgtcccttttgaaggtaaaattggaaa |
42176265 |
T |
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| Q |
209 |
ttcataaagtatgagttttgatagatagttagt |
241 |
Q |
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| T |
42176266 |
ttcataaagtatgagttttgatagatagttagt |
42176298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 8016432 - 8016268
Alignment:
| Q |
11 |
gatgaagaagaaactgaaacagtgtttttggattaaatatctctccaaat--gatgaatgatgaaataggtgtaatgtgggagagaaatattgagaatac |
108 |
Q |
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||||||||||||||||||||| ||||||||||| ||||| ||||||| | |||| |||||||| |||||||| | |||||||||||||||| |||| | |
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| T |
8016432 |
gatgaagaagaaactgaaacaatgtttttggatgaaatagctctccaggtacgatggatgatgaagtaggtgtattatgggagagaaatattgggaatgc |
8016333 |
T |
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| Q |
109 |
tacatataaatagaccaaatactgatgaggtggcactctcccaaagtttaaaggcttattggatt |
173 |
Q |
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| T |
8016332 |
tacatataaatagaccaaatactgaagaggtgacactcgcccaaattttaaagacttattggatt |
8016268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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