View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_84 (Length: 334)
Name: NF1304_low_84
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 54794546 - 54794223
Alignment:
| Q |
1 |
agctttttatttataaactttcaacagtagtctattagttattagtttaacttataaactacttaaactattgccaaatagatactacagaatagagtgt |
100 |
Q |
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| T |
54794546 |
agcttttcatttataaactttcaactatagtctattagctactagtttaacttataaactacttaaactattgccaaatagatactacagaatagagtgt |
54794447 |
T |
|
| Q |
101 |
gaataaactgaaccaagtcacacccttgactcatttatgggaaccaatcatttcattgttcatnnnnnnnnnnnncccgtagagtagattgttgtattga |
200 |
Q |
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| T |
54794446 |
gaataaactgaaccaagtcacacccttgactcatttatgggaaccaatcatttcattgttcataaaaaaaaaaaa-ccgtagagtagattgttgtattga |
54794348 |
T |
|
| Q |
201 |
attaaaatgcactattaagctattaactaattagatattagacgactttcaatataaacctaaattagcatattatttaatgctgcccccgacaagagtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
54794347 |
attaaaatgcactattaagctattaactaattagatattagacgactttcaatataaacctaaattagtatattatttaatgctgcccctgacaagagtc |
54794248 |
T |
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| Q |
301 |
taaaagttgttacatgtgcctatga |
325 |
Q |
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| T |
54794247 |
taaaagttgttacatgtgcctatga |
54794223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 52287244 - 52286903
Alignment:
| Q |
1 |
agctttttatttataaactttcaacagtagtctattagttattagtttaacttataaactacttaaactattgccaaatagatactacagaatagagtgt |
100 |
Q |
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| T |
52287244 |
agcttttcatttataaactttcaactgtagtccattagctactagtttaacttataaactacttaaactattgccaaatagatactacagaatggagtgt |
52287145 |
T |
|
| Q |
101 |
gaataaactgaaccaagtcacacccttgactcatttatgggaaccaatcatttcattgttcatnnnnnnnnnnnncccgtagagtagattgttgtattga |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||| |||||||| |
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| T |
52287144 |
gaataaactgacccaagtcacacccttgactcatttatggaaaccaatcatttcattgttcataaaaaaat------catagaatagattgatgtattga |
52287051 |
T |
|
| Q |
201 |
attaaaatgcactattaagctattaactaat--------------tagatattagacgactttcaatataaacctaaattagcat--------attattt |
278 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| || ||||||| |
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| T |
52287050 |
attaaaatgcactattaagctattaactaattaaataactcattctagatattagacgacttttaatataaacttaaattagtatattatttaattattt |
52286951 |
T |
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| Q |
279 |
aatgctgcccccgacaagagtctaaaagttgttacatgtgcctatgat |
326 |
Q |
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| T |
52286950 |
aatgctgcacccgacaagagtctaaaagttgttacatgtgcctatgat |
52286903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 802120 - 802067
Alignment:
| Q |
272 |
attatttaatgctgcccccgacaagagtctaaaagttgttacatgtgcctatga |
325 |
Q |
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| T |
802120 |
attatttaatactgcacccgacaagagtctaaaagttgttacatgtgcatatga |
802067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 802393 - 802311
Alignment:
| Q |
1 |
agctttttatttataaactttcaacagtagtctat--tagttattagtttaacttataaactacttaaactattgccaaataga |
82 |
Q |
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| T |
802393 |
agcttttcatttataaactttcaactataatctatagttgctattag-ttaacttataaactacttacactattgccaaataga |
802311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 802316 - 802251
Alignment:
| Q |
91 |
aatagagtgtgaataaactgaaccaagtcacacccttgactcatttatgggaaccaatcatttcat |
156 |
Q |
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|||||| ||||||||| ||| |||||||| |||||| ||||| |||||| ||||||||||||||| |
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| T |
802316 |
aatagaatgtgaataacttgacccaagtcatacccttaactcaattatggaaaccaatcatttcat |
802251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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