View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_86 (Length: 331)
Name: NF1304_low_86
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 12104133 - 12104459
Alignment:
| Q |
16 |
attcctcaaaaataattttattcgcgcagatggataaactagtaca---tactagctagcaataagaaactgatacatattgttcaacaaaaaaggggaa |
112 |
Q |
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| T |
12104133 |
attcctcaaaaataattttattcgcgcagatggataaactagtacaacatactagctagcaataagaaactgatacatattgttccacaaaaaaggggaa |
12104232 |
T |
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| Q |
113 |
aa---------------taaagaaactaatacannnnnnnnnnnnncattgatattattatttgatgtaaagtctccaaatgcgtcttttttccatctga |
197 |
Q |
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| T |
12104233 |
aataaagaaagggaaaataaagaaactaatacatatatttttttt-cattgatattattatttgatgtaaagtctccaaatgcgtcttttttccatctga |
12104331 |
T |
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| Q |
198 |
ggattacacagaagaacgtttcttgatccttgccaagcaattgtccattggccttgtgtgtggcaagaatctcactggagattttgggttgatttgttcc |
297 |
Q |
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| T |
12104332 |
ggattacactgaagaacgtttcttgatccttgccaagcaattgtccattggccttgtgtgtggcaagaatctcactggagattttgggttgatttgttcc |
12104431 |
T |
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| Q |
298 |
aacctgtgaaagcaagacacaacattaa |
325 |
Q |
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| T |
12104432 |
aacctgtgaaagcaagacacaacattaa |
12104459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 12112946 - 12113004
Alignment:
| Q |
211 |
gaacgtttcttgatccttgccaagcaattgtccattggccttgtgtgtggcaagaatct |
269 |
Q |
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| T |
12112946 |
gaacatttcttgacccttcctaagcaattgtccattggccttgtatgtggtaagtatct |
12113004 |
T |
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