View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_87 (Length: 331)
Name: NF1304_low_87
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 46792285 - 46792599
Alignment:
| Q |
11 |
tcttgatgcatttacctgatttagagcaaggatacatatctcctgattgaccatttatagtgatagcatcagatgagtttggggctcctccactttcaag |
110 |
Q |
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| T |
46792285 |
tcttgatgcatttacctgatttagagcaaagatacaaatctcctggttgaccatttatagtgatagcatcagatgagtttggggctcctccactttcaag |
46792384 |
T |
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| Q |
111 |
agattctgtcaataccttgttgacatcattcttccaccattcacctatatgtataaattaaataaaatcttactattattcctcctttctcttaaattgt |
210 |
Q |
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| T |
46792385 |
agattctgtcaataccttgttgacatcattcttccaccattcacctatatgtataaattaaataaaatcttactattattcctcctttctcttaaattgt |
46792484 |
T |
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| Q |
211 |
acactagtttatatgtaattttatgcatatgatcaatgacaacattaaaagattgtcataccaaatatgatgggtatctctccataaggtttaggaaaag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46792485 |
acactagtttatatgtaattttatgcatatgatcaatgacaacatcaaaagattttcataccaaatatgatgggtatctctccataaggtttaggaaaag |
46792584 |
T |
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| Q |
311 |
gataagtattattta |
325 |
Q |
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|||||||| |||||| |
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| T |
46792585 |
gataagtactattta |
46792599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 46784022 - 46784168
Alignment:
| Q |
11 |
tcttgatgcatttacctgatttagagcaaggatacatatctcctgattgaccatttatagtgatagcatcagatgagtttggggctcctccactttcaag |
110 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46784022 |
tcttgatgcatgtacctgatttagagcaaggatacagatctccaggctgaccattaatagtgatagcatcagatgagtttggggctcctccactttcaag |
46784121 |
T |
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| Q |
111 |
agattctgtcaataccttgttgacatcattcttccaccattcaccta |
157 |
Q |
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| T |
46784122 |
aaattctgtaaataccttgttgacatcattcttccaccattcaccta |
46784168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 46784251 - 46784325
Alignment:
| Q |
251 |
aacattaaaagattgtcataccaaatatgatgggtatctctccataaggtttaggaaaaggataagtattattta |
325 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |
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| T |
46784251 |
aacatcaaaagattttcataccaaatatgatgggtatctctccataaggcttaggaaaagggtaagtactattta |
46784325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 22119476 - 22119564
Alignment:
| Q |
230 |
tttatgcatatgatcaatgacaacattaaaagattgtcataccaaatatgatgggtatctctccataaggtttaggaaaaggataagta |
318 |
Q |
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| T |
22119476 |
tttatgcatatgatcaatgacaacatcaaaagattttcataccaaatatgatgggtatctctccataaggtttaggaaaaggataagta |
22119564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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