View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_89 (Length: 327)
Name: NF1304_low_89
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 13613090 - 13612928
Alignment:
| Q |
74 |
agacacgtgaagcaacatttcgatatttgaagtgaaacctatttcacatccaaccttaaaattgagctacaatgaagaaagttttgtatttgatggtatt |
173 |
Q |
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| T |
13613090 |
agacacgtgaagcaacattttgatatttaaagtgaaacctatttcacatccaaccttaaaattgagctacaatgaataaagttttgtatttgatggtatt |
13612991 |
T |
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| Q |
174 |
aatgatgacagataatattgattattattctattgtgtttggagagtttttgaaatgagttttg |
237 |
Q |
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| T |
13612990 |
aatgatgacggataatattgattattattctattgtgtctggagag-ttttgaaatgagttttg |
13612928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 33644658 - 33644496
Alignment:
| Q |
74 |
agacacgtgaagcaacatttcgatatttgaagtgaaacctatttcacatccaaccttaaaattgagctacaatgaagaaagttttgtatttgatggtatt |
173 |
Q |
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| T |
33644658 |
agacacgtgaagcaatatttcgatatttgaagtgaaacctatttcgcatccaaccttaaaattgagctacaatgaataaagttttgtatttgatggtatt |
33644559 |
T |
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| Q |
174 |
aatgatgacagataatattgattattattctattgtgtttggagagtttttgaaatgagttttg |
237 |
Q |
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| T |
33644558 |
aatgatgacggatgatattgattattattctattgtgtctggagag-ttttgaaatgagttttg |
33644496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 54134172 - 54134074
Alignment:
| Q |
138 |
agctacaatgaagaaagttttgtatttgatggtattaatgatgacagataatattgattattattctattgtgtttggagagtttttgaaatgagttttg |
237 |
Q |
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| T |
54134172 |
agctacaatgaataaagttttgtatttgatggtattcatgatgacggataatattgattattattctattgtgtctggagag-ttttgaaatgagttttg |
54134074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 54134697 - 54134625
Alignment:
| Q |
74 |
agacacgtgaagcaacatttcgatatttgaagtgaaacctatttcacatccaaccttaaaattgagctacaat |
146 |
Q |
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| T |
54134697 |
agacacgtgaagcaacatctcgatatttgaagtgaaacctatttcacatccaaccttaaaattgagctacaat |
54134625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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