View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_90 (Length: 326)
Name: NF1304_low_90
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_90 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 289
Target Start/End: Original strand, 8874357 - 8874640
Alignment:
| Q |
6 |
aataagaccccatatgagtaataccccnnnnnnntatactcttttgttttatgatattattgatatactctcttatatagaatataacaataaatgcttt |
105 |
Q |
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| T |
8874357 |
aataagaccccatatgagtaataccccaaaaaaatatactcttttgttttatgatattattgatatactctcttatatagaatataacaataaatgcttt |
8874456 |
T |
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| Q |
106 |
gttagtaaccaacaaacaactcttaagtctcacaacaaaggaaagagaaattttnnnnnnnnnnnnnnaaaagagagagaatagggttgatctaaaatca |
205 |
Q |
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| T |
8874457 |
gttagtaaccaacaaacaactcttaagtctcacaacaaaggaaagagaaatttttgtgtgtgtgtgtgaaaagagagagaataggattgatctaaaatca |
8874556 |
T |
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| Q |
206 |
gtagagggattgtggtaagaaatgaaaggtggaaacttcttaaatggggttgcaagagatatgctaggctaagctatgagatat |
289 |
Q |
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| T |
8874557 |
gtagagggattgtggtaagaaatgaaaggtggaaacttcttaaatggggttgcaagagatatgctaggctaagctatgagatat |
8874640 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 37244618 - 37244655
Alignment:
| Q |
289 |
ttgttaaattgtgaggaaccagccgaagattatattat |
326 |
Q |
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| T |
37244618 |
ttgttaaattgtgaggaaccagacgaagattatattat |
37244655 |
T |
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