View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1304_low_91 (Length: 325)

Name: NF1304_low_91
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1304_low_91
NF1304_low_91
[»] chr7 (1 HSPs)
chr7 (13-297)||(48251026-48251324)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 48251026 - 48251324
Alignment:
Q  13 agcttatattttcgtttaagctaatataatttgttttcataagctatctaatctatcatcttgaa-----------aatccaaattccagtgtgacttta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||| ||||||||    
T  48251026 agcttatattttcgtttaagctaatataatttgttttcataagctatctaatctatcatcttgaagagcttatgaaaatccaaattccagtttgacttta 48251125  T
Q  102 agttaacatgtagctgaatacaagttcaagttc------tactttcaatgctcatttcaagctactagttcatctgcttcnnnnnnnngtttatatatgt 195  Q
    |||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||         ||| | |||||    
T  48251126 agttaacatgtagctgaatacaagttcaagttcaagttctactttcaatgctcatttcaagctactagttcatctgcttctttttt---tttgtttatgt 48251222  T
Q  196 atttcaatttatttcctaaattatgttactgtttctttcttttcagaatcccgtaagttttctctgcatcagactagagcttcttcttcagaagaaacat 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48251223 atttcaatttatttcctaaattatgttactgtttctttcttttcagaatcccgtaagttttctctgcatcagactagagcttcttcttcagaagaaacat 48251322  T

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