View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1304_low_99 (Length: 314)
Name: NF1304_low_99
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_99 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 63 - 222
Target Start/End: Complemental strand, 52549552 - 52549393
Alignment:
| Q |
63 |
attaaatttcctatcacttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcct |
162 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52549552 |
attaaatttcctatcacttcaatgacaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcct |
52549453 |
T |
|
| Q |
163 |
gaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaactccttgt |
222 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52549452 |
gaacagctgcgccataagctacaacctcatcaggattaatgcccttgcacaactccttgt |
52549393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 52549924 - 52549858
Alignment:
| Q |
1 |
tccatggtttagccttccttaggaatttcttgtcttcaatacagtaattctcagcttcttgaattaa |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52549924 |
tccatggtttagccttccttaggaatttcttgtcttcaatacagtaattctcagcttcttgaattaa |
52549858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 15594620 - 15594753
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
|||||||||||||||| |||||| || | |||||| ||||||||||| | || |||||||||||||| |||||||| |||||||| |||||||| ||| |
|
|
| T |
15594620 |
ccaagagacaaaggtgcaacatcttgtatcaccaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagctgcaccataagcaacag |
15594719 |
T |
|
| Q |
187 |
cctcatcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
|||||||||| || |||| | ||||||| ||||| |
|
|
| T |
15594720 |
cctcatcagggttgatgctcatgcacaattcctt |
15594753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 34467364 - 34467261
Alignment:
| Q |
93 |
gacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcat |
192 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||||||||||| | || ||||| ||||||||| ||||| || ||||||||| ||||||| ||| |||||| |
|
|
| T |
34467364 |
gacaatggtgtaacatctcgcagcaccaagtttggaacattgttaaagcctttactcaacaaagcagcttgcacagctgcgacataagcgacagcctcat |
34467265 |
T |
|
| Q |
193 |
cagg |
196 |
Q |
| |
|
|||| |
|
|
| T |
34467264 |
cagg |
34467261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 7541796 - 7541945
Alignment:
| Q |
71 |
tcctatcacttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagct |
170 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
7541796 |
tcctatcactcccctgccaagagacaaaggtgtaacatcctgcagcaccaactttggagcgttcttaacgcctccactcaacaatgcagcctgaacagct |
7541895 |
T |
|
| Q |
171 |
gcgccataagccacaacctcatcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
|| |||||||| ||| |||||||||||||||||| ||||||||| ||||| |
|
|
| T |
7541896 |
gccccataagcaacagcctcatcaggattaatgctcttgcacaagtcctt |
7541945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 87 - 217
Target Start/End: Complemental strand, 12259163 - 12259033
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| ||||| |||||||||| ||| || ||| |||| ||| |
|
|
| T |
12259163 |
ccaagagacaaaggtgtaacatcctgcagctccaactttggaacattctggatatcttcacttaacaaagcagcctgaatagccgccccaaaagctacag |
12259064 |
T |
|
| Q |
187 |
cctcatcaggattaatgcccttgcacaactc |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
12259063 |
cctcatcaggattaatgctcttgcacaactc |
12259033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 11998994 - 11999127
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| ||||||||||||| || ||||||||||||| ||||| ||||||||||| |||||||| ||| |
|
|
| T |
11998994 |
ccaagagacaaaggagtaacatcctgcaacaccaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctacag |
11999093 |
T |
|
| Q |
187 |
cctcatcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| |
|
|
| T |
11999094 |
cctcatcagggttaatgctcttgcacaactcctt |
11999127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 90 - 220
Target Start/End: Original strand, 14702997 - 14703127
Alignment:
| Q |
90 |
agagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacct |
189 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| |||||||||| | | ||||||||||||| ||||||||||||||||| |||||||| ||| | | |
|
|
| T |
14702997 |
agagacaaaggtgtaatatcctgaagcaccaacttcggaacattcttgacgtcttcactcaacaaagcagcctgaacagctgccccataagctacagctt |
14703096 |
T |
|
| Q |
190 |
catcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
||||||| ||||||| |||||||||||||| |
|
|
| T |
14703097 |
catcagggttaatgctgttgcacaactcctt |
14703127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 12245982 - 12245855
Alignment:
| Q |
93 |
gacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcat |
192 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||||| || ||| ||||||||| ||||| ||||||||||| |||||||| ||| |||| | |
|
|
| T |
12245982 |
gacaaaggagtaacatcctgcaacaccaaatttggaacattcttaacatctttactcaacaaagcagcttgaacagctgccccataagcaacagcctcgt |
12245883 |
T |
|
| Q |
193 |
caggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
|||| ||||||| ||||||||| ||||| |
|
|
| T |
12245882 |
cagggttaatgctcttgcacaattcctt |
12245855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 220
Target Start/End: Complemental strand, 16662574 - 16662441
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
||||| ||||| || ||||| || |||||||||| |||||||||| || ||||||||||||||||| ||||| || |||||||| |||||||| ||| |
|
|
| T |
16662574 |
ccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacag |
16662475 |
T |
|
| Q |
187 |
cctcatcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||| |
|
|
| T |
16662474 |
cctcatcagggttgatgctcttgcacaactcctt |
16662441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 43624998 - 43625107
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||| ||||||||||||| |||||||| |||||| | |||||||| |||||||| |||||||| ||| |
|
|
| T |
43624998 |
ccaagtgacaaaggggtaacatctcgcagcaccaattttggaacattcttaatgcctttactcaaaatagcagcctggacagctgcaccataagcaacag |
43625097 |
T |
|
| Q |
187 |
cctcatcagg |
196 |
Q |
| |
|
|||||||||| |
|
|
| T |
43625098 |
cctcatcagg |
43625107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 7541410 - 7541465
Alignment:
| Q |
12 |
gccttccttaggaatttcttgtcttcaatacagtaattctcagcttcttgaattaa |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
7541410 |
gccttccttaggaatttcttgtcttcaatacggtatttctcagcttcttgaattaa |
7541465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 14702593 - 14702645
Alignment:
| Q |
12 |
gccttccttaggaatttcttgtcttcaatacagtaattctcagcttcttgaat |
64 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
14702593 |
gccttccttaggaatttcatgtcttcaatatggtaattctcagcttcttgaat |
14702645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 12234299 - 12234343
Alignment:
| Q |
8 |
tttagccttccttaggaatttcttgtcttcaatacagtaattctc |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12234299 |
tttagccttccttaggaatttcttgtcttcaatatggtaattctc |
12234343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 12259550 - 12259502
Alignment:
| Q |
19 |
ttaggaatttcttgtcttcaatacagtaattctcagcttcttgaattaa |
67 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
12259550 |
ttaggaatttcttgtcgtaaatacagtaattctcagcttcttgtattaa |
12259502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 5446276 - 5446234
Alignment:
| Q |
162 |
tgaacagctgcgccataagccacaacctcatcaggattaatgc |
204 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||||||||| |
|
|
| T |
5446276 |
tgaacagcggcgccataagccacagcttcatcaggattaatgc |
5446234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 11998725 - 11998754
Alignment:
| Q |
12 |
gccttccttaggaatttcttgtcttcaata |
41 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11998725 |
gccttccttaggaatttcttgtcttcaata |
11998754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 35132042 - 35132175
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||| | ||||||| ||||||||| ||||||||||| ||||| |||||||| ||| |
|
|
| T |
35132042 |
ccaagagacaaaggtgtaacatcctgtaacaccaactttggaacattttttatgcctttactcaacaaagcagcctgaactgctgccccataagctacag |
35132141 |
T |
|
| Q |
187 |
cctcatcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||| |
|
|
| T |
35132142 |
cctcatcggggttaatgctcttgcacaactcctt |
35132175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 30774838 - 30774971
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
||||| |||||||| || ||||| |||||||||||||||| |||||| ||||||||||||||| | |||||||| |||||||| || | ||| || |
|
|
| T |
30774838 |
ccaagtgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactg |
30774937 |
T |
|
| Q |
187 |
cctcatcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
30774938 |
cctcatcaggattgatgctcttgcacaaatcctt |
30774971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 9336473 - 9336367
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
||||| ||||| || |||||||| | |||||||| || || |||||| || |||||||||||| | ||||| ||||||||||| |||||||| ||| |
|
|
| T |
9336473 |
ccaagtgacaatggggtaacatctcgtagcaccaagttgggcgcattcttaaagccttcactcaaaatagcagcttgaacagctgcaccataagcaacag |
9336374 |
T |
|
| Q |
187 |
cctcatc |
193 |
Q |
| |
|
||||||| |
|
|
| T |
9336373 |
cctcatc |
9336367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 220
Target Start/End: Original strand, 28219489 - 28219637
Alignment:
| Q |
72 |
cctatcacttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctg |
171 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||| || | || ||||||||||||||| |||||||| ||||||| |
|
|
| T |
28219489 |
cctatcacttggataccaagagacaaaggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctg |
28219588 |
T |
|
| Q |
172 |
cgccataagccacaacctcatcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
| |||||||| ||| |||||||||| ||||||| ||| ||||| ||||| |
|
|
| T |
28219589 |
caccataagcaacagcctcatcagggttaatgctcttacacaattcctt |
28219637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 20)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 6789079 - 6789231
Alignment:
| Q |
68 |
atttcctatcacttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaaca |
167 |
Q |
| |
|
||||||||| ||| || | ||||||||||| ||||||||||| ||||||||||| ||||||||| ||| | |||||| |||||||| |||||||| ||| |
|
|
| T |
6789079 |
atttcctattactgccttaccaagagacaacggtgtaacatcttgcagcaccaagtttggaacactcttagagccttcgctcaacaaagcagcctggaca |
6789178 |
T |
|
| Q |
168 |
gctgcgccataagccacaacctcatcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
||||| || ||||| ||| |||||||||| || |||| | ||||||| ||||| |
|
|
| T |
6789179 |
gctgcaccgtaagcaacagcctcatcagggttgatgctcatgcacaaatcctt |
6789231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 3146835 - 3146959
Alignment:
| Q |
72 |
cctatcacttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctg |
171 |
Q |
| |
|
||||| ||||| || |||||||||||||| | |||||| |||| |||||| ||||||||||| | || | ||||||||||||| ||||| || ||||||| |
|
|
| T |
3146835 |
cctataacttcgataccaagagacaaaggagcaacatcttgcaccaccaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagctg |
3146934 |
T |
|
| Q |
172 |
cgccataagccacaacctcatcagg |
196 |
Q |
| |
|
| |||||||| || |||||||||| |
|
|
| T |
3146935 |
caccataagcaacggcctcatcagg |
3146959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 27831428 - 27831324
Alignment:
| Q |
116 |
caccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaac |
215 |
Q |
| |
|
|||||| |||||||||||| |||| | ||||||||||| |||||||| |||||||| ||| |||| ||| ||||||||||||| |||| ||||||||| |
|
|
| T |
27831428 |
caccaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaa |
27831329 |
T |
|
| Q |
216 |
tcctt |
220 |
Q |
| |
|
||||| |
|
|
| T |
27831328 |
tcctt |
27831324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 29578254 - 29578127
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
||||| ||||| ||||||| ||| ||| ||||| ||||||||||||| |||||| ||| ||||||| |||||||| |||||||| |||||||| ||| |
|
|
| T |
29578254 |
ccaagcgacaagggtgtaatatctcgcaagaccaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacag |
29578155 |
T |
|
| Q |
187 |
cctcatcaggattaatgcccttgcacaa |
214 |
Q |
| |
|
|||| ||||| || |||| | ||||||| |
|
|
| T |
29578154 |
cctcgtcagggtttatgctcatgcacaa |
29578127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 29582385 - 29582290
Alignment:
| Q |
125 |
tggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
||||||||||| |||||||||| ||| ||| |||||||| |||||||| |||||||| ||| |||||||||| || |||| | ||||||| ||||| |
|
|
| T |
29582385 |
tggaacattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaaatcctt |
29582290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 8581286 - 8581419
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
||||| ||||| ||||||||||| ||| | ||| ||||||||| ||| |||||||||||| | ||| |||||||||| ||| || |||||||| ||| |
|
|
| T |
8581286 |
ccaagtgacaatggtgtaacatctcgcaaaatcaagtttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaacag |
8581385 |
T |
|
| Q |
187 |
cctcatcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
|||||||||| || |||| |||||| || ||||| |
|
|
| T |
8581386 |
cctcatcagggttgatgctcttgcataattcctt |
8581419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 8590224 - 8590341
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
||||||||||| || |||||||| || |||||||| || |||||||||| ||| || |||| | ||| ||||| ||||||||||| |||||||| ||| |
|
|
| T |
8590224 |
ccaagagacaatggagtaacatcttgtagcaccaaattaggaacattcttaatcccatcacaaagcaaagcagcttgaacagctgcaccataagcaacag |
8590323 |
T |
|
| Q |
187 |
cctcatcaggattaatgc |
204 |
Q |
| |
|
||||||| ||||| |||| |
|
|
| T |
8590324 |
cctcatctggattgatgc |
8590341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 8575918 - 8576021
Alignment:
| Q |
93 |
gacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcat |
192 |
Q |
| |
|
||||| ||||||||||| | | |||||| ||||||||||||| | |||||||||||||||| ||||| || ||| | || |||||||| ||| |||||| |
|
|
| T |
8575918 |
gacaacggtgtaacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagcttggacaacagcaccataagcaacagcctcat |
8576017 |
T |
|
| Q |
193 |
cagg |
196 |
Q |
| |
|
|||| |
|
|
| T |
8576018 |
cagg |
8576021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 10494965 - 10494850
Alignment:
| Q |
78 |
acttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccat |
177 |
Q |
| |
|
||||| || ||||| ||||| || |||||||| | |||||||| || || ||||||| || |||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
10494965 |
acttcaataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccat |
10494866 |
T |
|
| Q |
178 |
aagccacaacctcatc |
193 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
10494865 |
aagcaacagcctcatc |
10494850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 27846652 - 27846566
Alignment:
| Q |
123 |
tttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttg |
209 |
Q |
| |
|
||||||||||||| |||| | ||||||||||| |||||||| |||||||| ||| |||| ||| |||||||||| || |||| |||| |
|
|
| T |
27846652 |
tttggaacattcttaatgtcatcactcaacaaagcagcctgcacagctgctccaaaagcaacagcctcatcagggttgatgctcttg |
27846566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 7878317 - 7878221
Alignment:
| Q |
85 |
tgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagc |
181 |
Q |
| |
|
||||||||||||| || |||||||| |||| |||||| || |||||||||| ||| || |||| | || ||||||||||||||||| |||||||| |
|
|
| T |
7878317 |
tgccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagc |
7878221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 17259856 - 17259960
Alignment:
| Q |
116 |
caccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaac |
215 |
Q |
| |
|
|||||| ||||||||||||| | || | |||| ||||| |||||||||||||| || |||||||| ||| |||||||||| || |||| |||||| || |
|
|
| T |
17259856 |
caccaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagggttgatgctcttgcataat |
17259955 |
T |
|
| Q |
216 |
tcctt |
220 |
Q |
| |
|
||||| |
|
|
| T |
17259956 |
tcctt |
17259960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 8558958 - 8559063
Alignment:
| Q |
76 |
tcacttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgcc |
175 |
Q |
| |
|
||||||| || ||||| |||||||| |||||||| |||||||| ||||||||||||| | || ||||||| | ||| ||||||| |||||||| || |
|
|
| T |
8558958 |
tcacttcaataccaagggacaaaggggtaacatctctcagcaccatgtttggaacattcttagtgtcttcactaagcaaaacagcctggacagctgcacc |
8559057 |
T |
|
| Q |
176 |
ataagc |
181 |
Q |
| |
|
|||||| |
|
|
| T |
8559058 |
ataagc |
8559063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 17267554 - 17267634
Alignment:
| Q |
116 |
caccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagg |
196 |
Q |
| |
|
|||||| ||||||||||||| | || | |||| ||||| |||||||||||||| || |||||||| ||| |||||||||| |
|
|
| T |
17267554 |
caccaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagg |
17267634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 8646067 - 8646114
Alignment:
| Q |
12 |
gccttccttaggaatttcttgtcttcaatacagtaattctcagcttct |
59 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
8646067 |
gccttccttaggaatttctcatcttcaatacggtaattttcagcttct |
8646114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 8667005 - 8667108
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
||||| |||||||| || ||||| | |||||||| || || ||||||| | |||||||||||| | ||||||||||||||||| |||||||| ||| |
|
|
| T |
8667005 |
ccaagtgacaaaggggtcacatctcgtagcaccaagttggggacattcttacagccttcactcaaaatagcagcctgaacagctgcaccataagcaacag |
8667104 |
T |
|
| Q |
187 |
cctc |
190 |
Q |
| |
|
|||| |
|
|
| T |
8667105 |
cctc |
8667108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 13333923 - 13333844
Alignment:
| Q |
114 |
agcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatc |
193 |
Q |
| |
|
|||||||| || || ||| ||| || |||||||||||| | ||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
13333923 |
agcaccaagttcgggacagtcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatc |
13333844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 8658949 - 8659055
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
||||| ||||| || |||||||| ||||||||||| ||||| ||||||| || ||||| || || | ||||| |||| |||||| |||||||| ||| |
|
|
| T |
8658949 |
ccaagtgacaatggggtaacatcttgcagcaccaagtttgggacattcttaaagcctttgcttaaaacagcagcttgaagagctgcaccataagcaacag |
8659048 |
T |
|
| Q |
187 |
cctcatc |
193 |
Q |
| |
|
||||||| |
|
|
| T |
8659049 |
cctcatc |
8659055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 8569897 - 8570014
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
||||| ||||| ||||||||||| ||| ||||| ||||||||| ||| || || |||||| ||| ||||||||| |||||| || ||||| ||| |
|
|
| T |
8569897 |
ccaagtgacaatggtgtaacatctcgcaaaaccaagtttggaacactcttaacgctttcactatgcaaaacagcctgaatagctgcaccgtaagcaacag |
8569996 |
T |
|
| Q |
187 |
cctcatcaggattaatgc |
204 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
8569997 |
cctcatcagggttaatgc |
8570014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 39985301 - 39985365
Alignment:
| Q |
156 |
gcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
|||||||||||||| || ||||| || ||| ||||||||||||| |||| |||||| | |||||| |
|
|
| T |
39985301 |
gcagcctgaacagcagcaccatatgcaacagcctcatcaggatttatgctcttgcatagctcctt |
39985365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 12528090 - 12528224
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
||||||||||||||| ||||||| |||||| || || |||||| ||| ||||||||||||||||| |||||||||||||| || |||||||| ||| |
|
|
| T |
12528090 |
ccaagagacaaaggtataacatcttgcagcgtcactttcggaacagtcttcatgccttcactcaacaaagcagcctgaacagcggcaccataagcaacag |
12528189 |
T |
|
| Q |
187 |
cctcatcaggattaatgcccttgcacaactccttg |
221 |
Q |
| |
|
|||||||||| || |||| |||| | ||||||||| |
|
|
| T |
12528190 |
cctcatcagggttgatgctcttgtataactccttg |
12528224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 43744402 - 43744535
Alignment:
| Q |
87 |
ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa |
186 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||||| |||||||| || | || ||||||||||||||| |||||||| |||||||| ||| ||| || |
|
|
| T |
43744402 |
ccaagagaaaaaggtgcaacatcttgcagcaccacgtttggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccaatagcaactg |
43744501 |
T |
|
| Q |
187 |
cctcatcaggattaatgcccttgcacaactcctt |
220 |
Q |
| |
|
|||||||||| |||||| ||| ||||| ||||| |
|
|
| T |
43744502 |
cctcatcagggttaatgttcttacacaaatcctt |
43744535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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