View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305-Insertion-1 (Length: 744)

Name: NF1305-Insertion-1
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305-Insertion-1
NF1305-Insertion-1
[»] chr2 (6 HSPs)
chr2 (186-623)||(32498700-32499143)
chr2 (6-158)||(32498545-32498703)
chr2 (621-744)||(32499552-32499675)
chr2 (414-505)||(38821366-38821457)
chr2 (414-452)||(24766152-24766190)
chr2 (410-443)||(15678169-15678202)
[»] chr5 (1 HSPs)
chr5 (410-490)||(40829410-40829490)
[»] chr1 (2 HSPs)
chr1 (410-461)||(49020428-49020479)
chr1 (410-451)||(47059913-47059954)
[»] chr6 (2 HSPs)
chr6 (411-453)||(16743298-16743340)
chr6 (531-573)||(33210228-33210270)
[»] chr4 (1 HSPs)
chr4 (414-452)||(20632681-20632719)
[»] chr3 (2 HSPs)
chr3 (410-452)||(52100257-52100299)
chr3 (414-491)||(33976388-33976465)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-172; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 186 - 623
Target Start/End: Original strand, 32498700 - 32499143
Alignment:
Q  186 gtgtatgactactcctgaattttacaaagtgccactacttggaaggatacaaataggggttcagtttgtatcagagtgatacaaaatcataggcaggatg 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32498700 gtgtatgactactcctgaattttacaaagtgccactacttggaaggatacaaataggggttcagtttgtatcagagtgatacaaaatcataggtaggatg 32498799  T
Q  286 ataaacccagagtttgtatcagagtttccagatggttccaaaaaagaaggttgtttcaaaagttatcaacttttgattattgattattcaaatatcatta 385  Q
    ||||||||||||||||||||| |||||||  |||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  32498800 ataaacccagagtttgtatcaaagtttccgaatggttccaaaaaaaaaggttgttccaaaagttgtcaacttttgattattgattattcaaatatcatta 32498899  T
Q  386 ctcaataatacatatgacatatgtaaatgagaaatgatattcatacaaccattttttaataacttttaagacaattctttttataatactctcattgtgt 485  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| ||||||||||||||| |||    
T  32498900 ctcaataatacatatgacatatgcaaatgagaaatgatatttatacaatcattttctaataacttttaagacaattctttctataatactctcattatgt 32498999  T
Q  486 ttttatcttctctgtattgcatt--gat-----tatatttattcacatgcacttagttgtctaataaattgtttt-aaaaatgatagttgaaataagata 577  Q
    || ||| | |  || ||| | ||   ||     |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32499000 ttatat-tgcattg-atttcgttccaatatacctatatttattcacatgcatttagttgtctaataaattgttttaaaaaatgatagttgaaataagata 32499097  T
Q  578 tacatcatctatgcaaatatatgtacctttgatgtcaaaacaatat 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32499098 tacatcatctatgcaaatatatgtacctttgatgtcaaaacaatat 32499143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 32498545 - 32498703
Alignment:
Q  6 cacttatccggtggcacagccatgatgacctcgtcatttacccgatttgcaaccatgataatcttattacttacctgattgcataaccatgacgagttgc 105  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32498545 cacttatccggtggcacaaccatgatgacctcttcatttacccgatttgcaaccatgataatcttattacttacctgattgcataaccatgacgagttgc 32498644  T
Q  106 agaaaatgat------ttagcaatctactttgtcttctcacacctctgatgtgcagtgt 158  Q
    ||||||||||      ||||||||||||||||||||||||||||| |||||||||||||    
T  32498645 agaaaatgatcctgacttagcaatctactttgtcttctcacacctatgatgtgcagtgt 32498703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 621 - 744
Target Start/End: Original strand, 32499552 - 32499675
Alignment:
Q  621 tatttatatacacttttgatgtcaaaacaatatgacgattataataatgatcgcgtatagagaatcagatttgatgcgctgaaatttataaaatattaca 720  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  32499552 tatttatatacacttttgatgtcaaaacaatatggcgattataataatgatcgcctatagagaatcagatttgatgtgctgaaatttataaaatattaca 32499651  T
Q  721 tatgtagtaccttttctctttgga 744  Q
    ||||||||||||||||||||||||    
T  32499652 tatgtagtaccttttctctttgga 32499675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 38821366 - 38821457
Alignment:
Q  414 gagaaatgatattcatacaaccattttttaataacttttaagacaattctttttataatactctcattgtgtttttatcttctctgtattgc 505  Q
    |||||||||||||   ||||||||||| | | |||||||  ||||||| | ||| | |||||| ||||||||||||| ||||||| ||||||    
T  38821366 gagaaatgatatttgaacaaccattttatgacaacttttgtgacaattttctttctcatactcacattgtgtttttaccttctctctattgc 38821457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 414 - 452
Target Start/End: Original strand, 24766152 - 24766190
Alignment:
Q  414 gagaaatgatattcatacaaccattttttaataactttt 452  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  24766152 gagaaatgatatttgtacaaccattttttaataactttt 24766190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 443
Target Start/End: Original strand, 15678169 - 15678202
Alignment:
Q  410 aaatgagaaatgatattcatacaaccatttttta 443  Q
    ||||||||||||||||| ||||||||||||||||    
T  15678169 aaatgagaaatgatatttatacaaccatttttta 15678202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 490
Target Start/End: Original strand, 40829410 - 40829490
Alignment:
Q  410 aaatgagaaatgatattcatacaaccattttttaataacttttaagacaattctttttataatactctcattgtgttttta 490  Q
    |||||||||||||||||  ||||||||||||||||||| ||||  ||||||| ||| | | |||||| |||| | ||||||    
T  40829410 aaatgagaaatgatatttgtacaaccattttttaataatttttgtgacaattttttctctcatactcacattatattttta 40829490  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 49020479 - 49020428
Alignment:
Q  410 aaatgagaaatgatattcatacaaccattttttaataacttttaagacaatt 461  Q
    |||||||||||||||||  |||||||||||||||| |||||||  |||||||    
T  49020479 aaatgagaaatgatatttgtacaaccattttttaacaacttttgtgacaatt 49020428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 451
Target Start/End: Complemental strand, 47059954 - 47059913
Alignment:
Q  410 aaatgagaaatgatattcatacaaccattttttaataacttt 451  Q
    |||||||||||||||||  |||||||||||||||| ||||||    
T  47059954 aaatgagaaatgatatttgtacaaccattttttaacaacttt 47059913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 453
Target Start/End: Complemental strand, 16743340 - 16743298
Alignment:
Q  411 aatgagaaatgatattcatacaaccattttttaataactttta 453  Q
    ||||||||||||||||  ||||||||||||||||||| |||||    
T  16743340 aatgagaaatgatatttgtacaaccattttttaataattttta 16743298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 531 - 573
Target Start/End: Original strand, 33210228 - 33210270
Alignment:
Q  531 ttagttgtctaataaattgttttaaaaatgatagttgaaataa 573  Q
    |||||||||| ||||||||||||||||||| | ||||||||||    
T  33210228 ttagttgtcttataaattgttttaaaaatggttgttgaaataa 33210270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 414 - 452
Target Start/End: Complemental strand, 20632719 - 20632681
Alignment:
Q  414 gagaaatgatattcatacaaccattttttaataactttt 452  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  20632719 gagaaatgatatttatacaaccattttttgataactttt 20632681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 410 - 452
Target Start/End: Original strand, 52100257 - 52100299
Alignment:
Q  410 aaatgagaaatgatattcatacaaccattttttaataactttt 452  Q
    |||||||||||||||||  ||||||||||||||||||| ||||    
T  52100257 aaatgagaaatgatatttgtacaaccattttttaataattttt 52100299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 491
Target Start/End: Complemental strand, 33976465 - 33976388
Alignment:
Q  414 gagaaatgatattcatacaaccattttttaataacttttaagacaattctttttataatactctcattgtgtttttat 491  Q
    |||||||||||||   ||| ||||||| ||| |||||||| |||||| || ||| | ||||||||||||| |||||||    
T  33976465 gagaaatgatatttgaacatccattttgtaacaacttttatgacaatcctctttttcatactctcattgtttttttat 33976388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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