View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305-Insertion-2 (Length: 185)
Name: NF1305-Insertion-2
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305-Insertion-2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 69; Significance: 3e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 9536084 - 9536156
Alignment:
| Q |
113 |
cctcagtcccacttttgcctttcctatttggacactcggttataaaacgccccagctgctttcatgcataaca |
185 |
Q |
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| T |
9536084 |
cctcagtcccacttttgcctttcctatttggacactcggttataaaatgccccagctgctttcatgcataaca |
9536156 |
T |
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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 9536011 - 9536086
Alignment:
| Q |
8 |
ctttttaatccatgttttcgcaaaaaattttgaaaa-cgaaaaacgctattcatcccatcctctagcgaacttcct |
82 |
Q |
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| T |
9536011 |
ctttttaatccatgtattcctaaaaaaaattgaaaaacgaaaaacgctattcatcccatcctctagcgaacttcct |
9536086 |
T |
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Target: chr7 (Bit Score: 28; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 16192238 - 16192330
Alignment:
| Q |
12 |
ttaatccatgttttcgcaaaaaattttgaa-aacgaaaaacgctattcatcccatcctctagcgaacttcctatagtttgtcatatagactaaca |
105 |
Q |
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| T |
16192238 |
ttaatccacgtttttgcaaaaccttttgaagaacgaaaaatgctattgacacccccctctagcgcacttctta--gtttgtcatatagactaaca |
16192330 |
T |
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