View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305-Insertion-3 (Length: 426)

Name: NF1305-Insertion-3
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305-Insertion-3
NF1305-Insertion-3
[»] chr1 (1 HSPs)
chr1 (8-426)||(39850470-39850891)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 39850891 - 39850470
Alignment:
Q  8 caagtcaacaaagccaaatatatattttatgcatcagttcggtgaagagtgactcttaatattcctcatgattatcttctgagccattgtaaatattgtc 107  Q
    |||||||||||||| ||| |||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||    
T  39850891 caagtcaacaaagctaaagatatattttatgcatcggttcggcgaagagtgacttttaatattcgtcatgattatcttctgagccatcgtaaatattatc 39850792  T
Q  108 tttttcacaaaaagtggcaaacattgctagtcatgattatcttttagtctattccattttgtaaattacaattattcttgttctagatataaaatataag 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39850791 tttttcacgaaaagtggcaaacattgctagtcatgattatcttttagtctattccattttgtaaattacaattattcttgttctagatataaaatataag 39850692  T
Q  208 atcaaagggtagagttgaaactttaaaattgtgtnnnnnnnnnnnnatcaggtttggggtagatataagatcactaaaggcaactatgatgctaagaaaa 307  Q
    |||||||||||||||| |||||||||||||||||            ||||||||||||||||||||||||||||| |||||||||||||||| || || |    
T  39850691 atcaaagggtagagttaaaactttaaaattgtgt-gggggtgggggatcaggtttggggtagatataagatcactcaaggcaactatgatgcaaataata 39850593  T
Q  308 cttaaatataaagtggcctaaaaccatgttgaaacaatatcctttggccctgaaacgacgtc----aatctgggcaaaactattaacacttccgcttatt 403  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  39850592 cttaaatataaagtggcccaaaaccatgttgaaacaatatcctttggccctgaaacgacgtcaattaatctgggcaaaactattaacacttccgcttatt 39850493  T
Q  404 tatcttctgcctctctctttgta 426  Q
    |||||||||||||||||||||||    
T  39850492 tatcttctgcctctctctttgta 39850470  T

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