View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305-Insertion-4 (Length: 723)

Name: NF1305-Insertion-4
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305-Insertion-4
NF1305-Insertion-4
[»] chr8 (8 HSPs)
chr8 (180-375)||(11176585-11176780)
chr8 (504-723)||(11176237-11176455)
chr8 (44-111)||(11176850-11176917)
chr8 (214-288)||(11156892-11156966)
chr8 (44-109)||(11164065-11164130)
chr8 (625-696)||(11163112-11163180)
chr8 (44-111)||(11157102-11157169)
chr8 (214-288)||(11163850-11163924)
[»] chr3 (2 HSPs)
chr3 (220-288)||(4703899-4703967)
chr3 (291-331)||(4704021-4704061)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 180 - 375
Target Start/End: Complemental strand, 11176780 - 11176585
Alignment:
Q  180 cctaatagatctgagaagagaataagaacctggtggataacatcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatg 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11176780 cctaatagatctgagaagagaataagaacctggtggataacatcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatg 11176681  T
Q  280 aaccatttttacgaatcctcatatcaaagaatctatgaaagaatgatattatgattttcttgaattaaaaattggttttatactactgtcttgaag 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11176680 aaccatttttacgaatcctcatatcaaagaatctatgaaagaatgatattatgattttcttgaattaaaaattggttttatactactgtcttgaag 11176585  T

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Target: chr8; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 504 - 723
Target Start/End: Complemental strand, 11176455 - 11176237
Alignment:
Q  504 ctcttatataaacacaataggagtatatgttttcctatttgtttaatttcaataaaggaactcatatttgctcnnnnnnntaaaataat-ttggttgtct 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||  ||||||||||    
T  11176455 ctcttatataaacacaataggagtatatgttttcctatttgtttaatttcaataaaggaactcatatttgctcaaaaaa--aaaataaaattggttgtct 11176358  T
Q  603 aaaagtgaattttttagaagaaaaggaaatgatcacgtcgtgacaagcctgctgtgtaatccacccaaagcatcgatgctagattcggttcaactccaat 702  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11176357 aaaagtgaattttttagaagaaaaggaagtgatcacgtcgtgacaagcctactgtgtaatccacccaaagcatcgatgctagattcggttcaactccaat 11176258  T
Q  703 taattgaaccattttacttga 723  Q
    |||||||||||||||||||||    
T  11176257 taattgaaccattttacttga 11176237  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 11176917 - 11176850
Alignment:
Q  44 tagtgagaaatgagagataaaacagattcccattaacataatttgaagaaaaaagggaataagaagtt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11176917 tagtgagaaatgagagataaaacagattcccattaacataatttgaagaaaaaagggaataagaagtt 11176850  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 11156966 - 11156892
Alignment:
Q  214 ggataacatcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatgaaccatttt 288  Q
    |||| ||||||||||||||||||||||| |||||||| || | ||||||| |||||| |||||||||||||||||    
T  11156966 ggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactggaaatgaaccatttt 11156892  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 11164130 - 11164065
Alignment:
Q  44 tagtgagaaatgagagataaaacagattcccattaacataatttgaagaaaaaagggaataagaag 109  Q
    ||||||||||||||| | || | |||| ||||||||| |||||||||| |||||||||||||||||    
T  11164130 tagtgagaaatgagatagaatatagatacccattaacctaatttgaaggaaaaagggaataagaag 11164065  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 696
Target Start/End: Complemental strand, 11163180 - 11163112
Alignment:
Q  625 aaggaaatgatcacgtcgtgacaagcctgctgtgtaatccacccaaagcatcgatgctagattcggttcaac 696  Q
    ||||||| |||||||| |||||||||   | ||||| ||||||||||||||||||||||||||| |||||||    
T  11163180 aaggaaaggatcacgttgtgacaagct--cagtgta-tccacccaaagcatcgatgctagattccgttcaac 11163112  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 11157169 - 11157102
Alignment:
Q  44 tagtgagaaatgagagataaaacagattcccattaacataatttgaagaaaaaagggaataagaagtt 111  Q
    ||||||||||||||||| || | |||| ||||||||| || ||||||| ||||| || ||||||||||    
T  11157169 tagtgagaaatgagagagaacatagatacccattaacctattttgaagcaaaaaaggcataagaagtt 11157102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 11163924 - 11163850
Alignment:
Q  214 ggataacatcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatgaaccatttt 288  Q
    |||| ||||||||||||||||||||||| ||||||| ||| | ||||| | ||| |  || ||||||||||||||    
T  11163924 ggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccatttt 11163850  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 4703899 - 4703967
Alignment:
Q  220 catcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatgaaccatttt 288  Q
    |||||||||||||||||||||| ||||||||||||  |||||||| |||||  || |||||| ||||||    
T  4703899 catcccatggagattggttaagctgacaaacgtgcatttgaaaaggttcaaccggtaatgaatcatttt 4703967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 4704021 - 4704061
Alignment:
Q  291 cgaatcctcatatcaaagaatctatgaaagaatgatattat 331  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  4704021 cgaatcctcatatcaaagaatctatgaatgaataatattat 4704061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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