View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13050_high_3 (Length: 447)
Name: NF13050_high_3
Description: NF13050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13050_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 41621158 - 41620803
Alignment:
| Q |
14 |
gttaattcattcacctataattcgtgaaattgaattcgctttaaatagcaaagctcaattaaaaaatgtagtttctgtcaaaattaaagtgatgcatttt |
113 |
Q |
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| T |
41621158 |
gttaattcattcacctataattcgtgaaattgaattcgctttaaatagcaaagctcaattaaaaaatgtagtttctgtcaaaattaaagtgatgcatttt |
41621059 |
T |
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| Q |
114 |
gtcattctaacaaactccttgttaaccaaaacagacactgt-------------------tttatgaagagcacatgtagtgtccgattccaagagtgat |
194 |
Q |
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| T |
41621058 |
gtcattctaacaaactccttgttaaccaaaacatacactgaatttgatagagtttgtagctttatgaagagcacatgtagtgtccgattccaagagtgat |
41620959 |
T |
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| Q |
195 |
caaggaaattgtgtcttcaatacttagcctaacttttgtgactagtcatgtaacataggaagccctacgatacaaatggaaataaaataaaagaagctcc |
294 |
Q |
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| T |
41620958 |
caaggaaattgtgtcttcaatacttagcctaacttttgtgactagtcatgtaacataggaagccctacgatacaaatggaaataaaagaaaagaagctcc |
41620859 |
T |
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| Q |
295 |
gccctaaattaagcactccactactaaaaattacgcatattaaatgttttgtacta |
350 |
Q |
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| T |
41620858 |
gtcctaaattaagcactccactactaaaaattacgcatattaaatgttttctacta |
41620803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 349 - 439
Target Start/End: Complemental strand, 41620515 - 41620426
Alignment:
| Q |
349 |
tatctgttattattttcgctcttaattataaaaagaaaatattaaatatattttgtctttgtaaaaatatctcacttagcctttgatgatg |
439 |
Q |
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| T |
41620515 |
tatctgttattattttcgctcttaattataaaaagaaaatattaaatatattttgtctttgt-aaaatatctcacttagcctttgatgatg |
41620426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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