View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13050_high_4 (Length: 437)
Name: NF13050_high_4
Description: NF13050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13050_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 47075037 - 47075456
Alignment:
| Q |
1 |
atgtcagcgtaatctatatatgaatatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagaca |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075037 |
atgtcagagtaatctatatatgaatatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagaca |
47075136 |
T |
|
| Q |
101 |
aagtggtctccattttggatttaaattgttgtctttaacttcagtcttgcaaataggaacagaacctccactctcaacaattcttgatatccttagaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075137 |
aagtggtctccattttggatttaaattgttgtctttaacttcagtcttgcaaataggaacagaacctccactctcaacaattcttgatatccttagaaaa |
47075236 |
T |
|
| Q |
201 |
ggatcctacaagaaaaagcaagatgagttttaagaatgtaataaataaaacggatatgatggagcttggtattgaatatttacacttttagataaaatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075237 |
ggatcctacaagaaaaagcaagatgagttttaagaatgtaataaataaaacggatatgatggagcttggtattgaatatttacacttttagataaaatgt |
47075336 |
T |
|
| Q |
301 |
ctttgttatccaagtgagaacaacggaagataatctcaacagcactccttgcagcaacagtctcctcagcatgaatggtaattgccccttgttttctttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075337 |
ctttgttatccaagtgagaacaacggaagataatctcaacagcactccttgcagcaacagtctcctcagcatgaatggtaattgccccttgttttctttg |
47075436 |
T |
|
| Q |
401 |
accactaatccctcttttgt |
420 |
Q |
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|||||||||||||||||||| |
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| T |
47075437 |
accactaatccctcttttgt |
47075456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 47057258 - 47057452
Alignment:
| Q |
24 |
atatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggattta |
123 |
Q |
| |
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||||||| |||||| |||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
47057258 |
atatgatttaacattagacatgttgtgttcaaagatcgcaagcttactatacttccaaactgctggaaattaagacaaactggtttccattttggattta |
47057357 |
T |
|
| Q |
124 |
aatt-gttgtctttaacttcagtcttgcaaataggaacagaacctccactctcaacaattcttgatatccttagaaaaggatcctacaagaaaaa |
217 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47057358 |
aatttgttgtctataacttcagtcttgcaaataggaacagaacctccactctcaaccattcttgatatccttagaaaaggatcctacaagaaaaa |
47057452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 268 - 382
Target Start/End: Original strand, 47057666 - 47057780
Alignment:
| Q |
268 |
ggtattgaatatttacacttttagataaaatgtctttgttatccaagtgagaacaacggaagataatctcaacagcactccttgcagcaacagtctcctc |
367 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
47057666 |
ggtattgaatatgtacacttttagaaaaaatgtctttgttatccaagcgagaacaacggaagataatctcaacagcactccttgaagcaacagtctcttc |
47057765 |
T |
|
| Q |
368 |
agcatgaatggtaat |
382 |
Q |
| |
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|||| |||||||||| |
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| T |
47057766 |
agcaagaatggtaat |
47057780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 18230362 - 18230146
Alignment:
| Q |
1 |
atgtcagcgtaatctatatatgaatatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagaca |
100 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||||| ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18230362 |
atgtcagagtaatctatatatgaatatggtgtaacatcggacatgttgtgcacaaagatcgaaagcttactttacttccaaactgctggaaattaagaca |
18230263 |
T |
|
| Q |
101 |
aagtggtctccattttggatttaaattgttgtctttaacttcagtcttgcaaataggaacagaacctccactctcaacaattcttgatatccttagaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| | || |||||||||||||||| |
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| T |
18230262 |
aagtggtctccattttggatttaaattgttgtctataacttcagtcttgaaaataggaacagttcctccactctcaaccactcgtgatatccttagaaaa |
18230163 |
T |
|
| Q |
201 |
ggatcctacaagaaaaa |
217 |
Q |
| |
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||||||| ||||||||| |
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| T |
18230162 |
ggatcctgcaagaaaaa |
18230146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 254 - 420
Target Start/End: Complemental strand, 18230076 - 18229910
Alignment:
| Q |
254 |
atatgatggagcttggtattgaatatttacacttttagataaaatgtctttgttatccaagtgagaacaacggaagataatctcaacagcactccttgca |
353 |
Q |
| |
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|||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||| || ||||| |
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| T |
18230076 |
atatgatgaagctaggtattgaatatgtacacttttagaaaaaatgtctttgttatccaagtgagagcagcggaagataatatcaacagcattctttgca |
18229977 |
T |
|
| Q |
354 |
gcaacagtctcctcagcatgaatggtaattgccccttgttttctttgaccactaatccctcttttgt |
420 |
Q |
| |
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||||| || |||||||| |||||||||||||||||||| ||| |||||| | || |||||| ||||| |
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| T |
18229976 |
gcaactgtttcctcagcgtgaatggtaattgccccttgatttatttgactaatattccctcctttgt |
18229910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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