View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13050_high_5 (Length: 413)
Name: NF13050_high_5
Description: NF13050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13050_high_5 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 25)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 4266621 - 4266324
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4266621 |
caatggtgtatatagaagggaacatagagtagagagcattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
4266522 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4266521 |
tctatccgccacttcggtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
4266422 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatcgcaattgtaaaagtatgtcaatagttgaaacttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4266421 |
tgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatcgcaattgcaaaagtatgtcaatagttgaaacttt |
4266324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 4458272 - 4458569
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
4458272 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcataagaagtattgataacaatagaagaggctctatgaca |
4458371 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4458372 |
tctatctgccacttcggttataaattttatcatcaaattattaggatctgtaatctttataaaatcaggaaggtccttcaacctaaagttttgcaaacct |
4458471 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatcgcaattgtaaaagtatgtcaatagttgaaacttt |
316 |
Q |
| |
|
|||||||||||| ||||| || || |||||||||||||||| ||||||||| ||||||||| | ||||| |||||||||| ||||||||||||||| |
|
|
| T |
4458472 |
gaaatccagtcaccgacttttttgtccaaatatccatttgttaaataactctcttctgcatattgtaattgcaaaagtatgttaatagttgaaacttt |
4458569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 4481370 - 4481635
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| || ||| |||| ||||| |
|
|
| T |
4481370 |
caatggtgtatagagaagggaatatagaatagagagaattcataacatcactctcaagttcataagaagtattgataacaaaagcagatgctctttgaca |
4481469 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
| |||| | ||||||| | || ||||||| ||||| | |||||||||||| | | | | |||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
4481470 |
tttatctgtcacttcatttttatattttatgatcaagtgattaggatctgttaccttaattaaatcaggaaggtccttcaatctaaagtttttcaaacct |
4481569 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatcgcaat |
287 |
Q |
| |
|
||||||||| | ||| | || |||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
4481570 |
ggaatccagt---ctactgttgcgtccaaatatccatctgttaaataactctcatctgcatatcacaat |
4481635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 4514576 - 4514301
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||||||||||| |||||||| |||||| || |||| ||||||||||||||||||||| |||| |||||||| | || ||||| ||| |||| ||| |
|
|
| T |
4514576 |
caatggtgtatagagaagggagcatagaataaagagcattcataacatcactctcaagatcattagaagtatttaaaaaaatagcagaagctctatgaag |
4514477 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
|||||| ||| |||| ||||||| || |||||||||||||| |||||| ||| | ||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
4514476 |
tctatctaccatttcaaagataaattctaacatcaaatcattagcatctgttgtccgtataaaatcaggaaggtccttcagtctaaagtttcgcaaacct |
4514377 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatcgcaattgtaaaagta |
297 |
Q |
| |
|
||||||||| |||||||| | || |||||||||||||| | |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
4514376 |
ggaatccagt---caactttagtgtccaaatatccatttgtcaaataactctcatctgcatatcataattgcaaaagta |
4514301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 3172418 - 3172678
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||| ||| |||||| |
|
|
| T |
3172418 |
caattgtgtatagagaagggaatatagaactaagagtattcataacatcactctcaagttcattagaagtgttgaaaacaatagcagaagctttgtgaca |
3172517 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
| |||| | |||||| | ||||||| |||||||||||||||||||||| | ||||| | ||| |||||| | |||||| |||||||||| ||||||| |
|
|
| T |
3172518 |
tttatctcctacttcaatcataaattctatcatcaaatcattaggatcttttatcctaattaaagtaggaagatgcttcaatctaaagtttttcaaacct |
3172617 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatc |
282 |
Q |
| |
|
||||||||| ||||| || | || ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3172618 |
ggaatccagt---caactatagtgtccaaatatccatttgtttcataactctcatctgcatatc |
3172678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 51 - 282
Target Start/End: Original strand, 4506566 - 4506794
Alignment:
| Q |
51 |
agagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgacatctatccgccacttcagtaataaattttatca |
150 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||| ||| || | || || ||||| ||||||||| |||| |
|
|
| T |
4506566 |
agagcattcagaacattactctcaagttcattagaagtattgagaacaatagaagaggctctatgaaatgtttctgctgcttcaataataaattctatcc |
4506665 |
T |
|
| Q |
151 |
tcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacctcgaatccagtcaccaactttattatctaaata |
250 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||| || |||| ||||||||| ||||||| ||||||||| | || ||| | || ||||| |
|
|
| T |
4506666 |
tcaaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttctcaaacctggaatccagt---ctaccttagtgtccaaata |
4506762 |
T |
|
| Q |
251 |
tccatttgttagataactctcatctgcatatc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4506763 |
tccatttgttagataactctcatctgcatatc |
4506794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 4574985 - 4575242
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||| ||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||| || ||| ||| |||| ||||| |
|
|
| T |
4574985 |
caattgtgtatagagaagggaacatagaatagaaagcattcataacatcactctcaagttcattagaagtattgaataccataccagaagctctatgaca |
4575084 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
| |||| |||||||||||| ||||| ||||| |||| |||||||||| | | || || | || |||||| |||||||| || ||||||| ||||||| |
|
|
| T |
4575085 |
tttatctgccacttcagtattaaatcttatcgtcaagtcattaggattttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacct |
4575184 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcat |
279 |
Q |
| |
|
| ||||||| ||| ||| | || |||||| |||||||||||| |||||||||||||| |
|
|
| T |
4575185 |
gggatccagt---caatttttgtgtccaaatattcatttgttagatcactctcatctgcat |
4575242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 4470480 - 4470754
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||||| ||||| ||||||||| ||||| ||||| ||||||||||||||| |||||||||| |||||||| | |||||||| ||| |||| ||||| |
|
|
| T |
4470480 |
caatggcgtatagagaagggaatatagaatagagttcattcataacatcactttcaagttcattagaagtattcaaaacaatagcagaagctctttgaca |
4470579 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
| ||| | ||||||| | || |||||| ||| || |||||||||||| | ||| || | ||||||| |||||||| || ||||||| ||||||| |
|
|
| T |
4470580 |
tttatttgtcacttcatttgtatattttaacataaagtcattaggatcttttatctttattgtttcaggaaaatccttcaatctgaagtttttcaaacct |
4470679 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatcgcaattgtaaaagt |
296 |
Q |
| |
|
||||||||| |||||| | | || |||||||||| | |||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
4470680 |
ggaatccagt---caacttcaatgtcgaaatatccatctattagataactctcatctgcatatcataattgaaaaagt |
4470754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 4561181 - 4561438
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||| ||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||| || ||| ||| |||| |||| |
|
|
| T |
4561181 |
caattgtgtatagagaagggaacatagaatagaaagcattcataacatcactctcaagttcattagaagtattgaataccataccagaagctctaagaca |
4561280 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
| |||| ||||||||||| ||||| ||||| |||| |||||||||| | | || || | || |||||| |||||||| || ||||||| ||||||| |
|
|
| T |
4561281 |
tttatctgccacttcagtgttaaatcttatcgtcaagtcattaggattttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacct |
4561380 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcat |
279 |
Q |
| |
|
| ||||||| ||||||| | || | |||| |||||||||||| |||||||||||||| |
|
|
| T |
4561381 |
gggatccagt---caactttcgtgtccagatattcatttgttagatcactctcatctgcat |
4561438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 282
Target Start/End: Original strand, 4517042 - 4517258
Alignment:
| Q |
63 |
acatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgacatctatccgccacttcagtaataaattttatcatcaaatcattag |
162 |
Q |
| |
|
|||||| |||||||||||| |||||||||| |||||||||| ||| ||| ||||| ||| ||||| | |||||||||||||| | |||||||| |
|
|
| T |
4517042 |
acatcattctcaagttcatcagaagtattgaaaacaatagaattagcttcatgaaccctatcggccgcttcaatgataaattttatcattatatcattag |
4517141 |
T |
|
| Q |
163 |
gatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacctcgaatccagtcaccaactttattatctaaatatccatttgttag |
262 |
Q |
| |
|
|||| ||| | ||| |||| ||||| |||||||| | ||||||||| ||||||| ||||||||| |||||||| | || |||||||||||||| | |
|
|
| T |
4517142 |
gatcagtagttcttataaagtcaggcaggtcctttagtctaaagtttcccaaacctggaatccagt---caactttagtgtccaaatatccatttgtcaa |
4517238 |
T |
|
| Q |
263 |
ataactctcatctgcatatc |
282 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4517239 |
ataactctcatctgcatatc |
4517258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 4461800 - 4462060
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||||||||||| ||||||||| ||| | ||||| |||||||| |||||| || ||||||| |||||||| | || || || ||| |||| |||||| |
|
|
| T |
4461800 |
caatggtgtatagagaagggaatataaaatagagttcattcataatatcactttcgagttcattagaagtattcaaaataacagcagaagctctgtgaca |
4461899 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
| |||| | || |||| | | ||||||||||| ||| | |||||||||| | ||| || | ||||||| |||||||| || || |||| ||||||| |
|
|
| T |
4461900 |
tttatctgtcatttcactgacaaattttatcagcaagttattaggatcttttatctttattgtttcaggaaaatccttcaatctgaaatttttcaaacct |
4461999 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatc |
282 |
Q |
| |
|
||||||||||| |||| | | ||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
4462000 |
ggaatccagtca---acttcagtgtctaaatatccatctgttagataaatctcatctgcatatc |
4462060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 4592911 - 4593171
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||||| ||| | |||||| ||||||||| |||||| ||| || ||||||||||||||||||| ||||||| | || ||||| |||| | ||| |
|
|
| T |
4592911 |
caatggggtaaagagaaggaaacatagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaataatagtagagtttttatgatc |
4593010 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
| |||| ||||| ||| | | ||| |||| ||| | |||||| |||||||| |||| || | |||| || ||||||||||| |||||||| ||||||| |
|
|
| T |
4593011 |
tttatcagccacatcaattacaaagtttaacataatatcatttggatctgttgtcctgatatagtcagcaatgtccttcaaccgaaagtttttcaaacct |
4593110 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatc |
282 |
Q |
| |
|
||||||| || |||||| | || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4593111 |
ggaatccaatct---actttagtttccaaatatccatttgttagataactctcatctgcatatc |
4593171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 4266286 - 4266228
Alignment:
| Q |
346 |
tcaagattttaaatcatgttcccagtaataattgt-gttgtgttgtcattttgatgatg |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4266286 |
tcaagattttaaatcatgttcccagtaataattgtggttgtgttgtcattttgatgatg |
4266228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 27 - 277
Target Start/End: Complemental strand, 4299268 - 4299021
Alignment:
| Q |
27 |
tatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgacatctatccg |
126 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||||| | |||||||| ||| ||| |||| ||||||| | |
|
|
| T |
4299268 |
tataaagaagggaacatagaatagagagcattcattacatcactctcaagttcatcataagtattaaaaacaatagcagatgctttgtgaaatctatctg |
4299169 |
T |
|
| Q |
127 |
ccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacctcgaatcca |
226 |
Q |
| |
|
|| ||||| | ||||| || ||| | |||||| |||| |||| ||||| |||| |||| || || ||||| | |||||| ||||| ||| |||| || |
|
|
| T |
4299168 |
ccgcttcaatggcaaattctaccatgacatcatttggatttgtactccttataaagtcagttagatctttcaatcgaaagttctgcaatcctggaataca |
4299069 |
T |
|
| Q |
227 |
gtcaccaactttattatctaaatatccatttgttagataactctcatctgc |
277 |
Q |
| |
|
|| | | ||| | ||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
4299068 |
gt---ctagtttgatgtctaaatatccgtttgtcaaataactctcatctgc |
4299021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 282
Target Start/End: Original strand, 4602477 - 4602729
Alignment:
| Q |
27 |
tatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgacatctatccg |
126 |
Q |
| |
|
|||| ||||||||||||||| || || | |||||| ||||||||||||||||||| ||||||| | || ||||| |||| ||| | | ||||||| | |
|
|
| T |
4602477 |
tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtctctattaaatctatctg |
4602576 |
T |
|
| Q |
127 |
ccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacctcgaatcca |
226 |
Q |
| |
|
| | |||| || |||| || ||| | |||||| |||||||| |||| || | ||| ||| ||||||||||| |||||||| ||||||| ||||||| |
|
|
| T |
4602577 |
caatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagtttttcaaacctggaatcca |
4602676 |
T |
|
| Q |
227 |
gtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatc |
282 |
Q |
| |
|
| | ||||| | || ||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
4602677 |
---atctacttttgtttccaaacatccatttgttagataactatcatctgcatatc |
4602729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 4626628 - 4626823
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
||||||| |||| |||| ||||| |||| ||||| | |||||| ||||||| ||||||||||| |||| |||| |||||||| || |||| |||| | |
|
|
| T |
4626628 |
caatggtatatacagaaaggaacgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaaa |
4626727 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaa |
214 |
Q |
| |
|
|||||| ||| ||||| | | ||||| || ||| | ||||||||||| ||| ||||| |||| | | |||||||||||| || |||||| ||||| |
|
|
| T |
4626728 |
tctatctgccgcttcaatgagaaattctaccatgacatcattaggatttgttgtccttataaagttaagaaggtccttcagccgaaagttctgcaa |
4626823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 4617874 - 4617962
Alignment:
| Q |
191 |
gtccttcaacctaaagttttgcaaacctcgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatc |
282 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||| || |||||| | || ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4617874 |
gtccttcaaccgaaagtttttcaaaccgggaatccaatct---actttagtttccaaacatccatttgttagataactctcatctgcatatc |
4617962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 4489810 - 4489550
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||| ||||||| ||||||||| ||||| |||| ||| ||| |||||||||||||||||| |||||||||| || ||| | ||| ||| ||||| |
|
|
| T |
4489810 |
caattgtgtatacagaagggaatatagaactaagagcattgatagcatcactctcaagttcattagaagtattgaaaataatggttgagcctctttgaca |
4489711 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
| |||| | | ||||| | || ||||||||| ||| ||||||| | |||||| | | |||||||| |||||||| |||| | ||| ||||||| |
|
|
| T |
4489710 |
tttatctgtctcttcaattttatattttatca------catcaggatcttttatccttattatatcaggaaaatccttcaaactaatgcttttcaaacct |
4489617 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatcgcaatt |
288 |
Q |
| |
|
||||||| ||| |||||| | || |||| ||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
4489616 |
ggaatccattca---actttagtgtccaaatttccatctgttagattactctcatctgcatatcacaatt |
4489550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 4503808 - 4503725
Alignment:
| Q |
51 |
agagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgacatctatccgccacttca |
134 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| |||||||||| |||||| | ||||||| |||||| |||| ||||||||| |
|
|
| T |
4503808 |
agagcattcatagcatcactctcaagttcattagaagtattgaaaacaatggctgaggctctttgacatttatctgccacttca |
4503725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 279
Target Start/End: Complemental strand, 4613038 - 4612916
Alignment:
| Q |
154 |
aatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacctcgaatccagtcaccaactttattatctaaatatcc |
253 |
Q |
| |
|
||||||| ||||||||||||||| || | | ||||| ||||||| | |||||| ||||| ||| |||| ||||| |||||| |||| |||||||| |
|
|
| T |
4613038 |
aatcatttggatctgtaatccttatatagccgggaagatccttcagtcgaaagttctgcaatccttgaatacagtcc---actttagtatccaaatatcc |
4612942 |
T |
|
| Q |
254 |
atttgttagataactctcatctgcat |
279 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
4612941 |
gtttgtcagataactctcatctgcat |
4612916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 4568849 - 4568970
Alignment:
| Q |
155 |
atcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacctcgaatccagtcaccaactttattatctaaatatcca |
254 |
Q |
| |
|
|||||||||||| ||| | ||| |||||||| | |||||||| | |||| |||| |||||||| ||||||||| |||||||| | | ||||||||| |
|
|
| T |
4568849 |
atcattaggatcagtagttcttataaaatcaagcaggtcctttagtctaatgtttcgcaaacctggaatccagt---caactttagtgaccaaatatcca |
4568945 |
T |
|
| Q |
255 |
tttgttagataactctcatctgcatat |
281 |
Q |
| |
|
||||| |||||| ||||||||||||| |
|
|
| T |
4568946 |
tttgtcagataa--ctcatctgcatat |
4568970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 4259601 - 4259547
Alignment:
| Q |
27 |
tatatagaagggaacatagagtagagagtattcataacatcactctcaagttcat |
81 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||| ||||||||||||||||||| |
|
|
| T |
4259601 |
tataaagaagggaacatagaatagagcacattcattacatcactctcaagttcat |
4259547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 4484202 - 4484150
Alignment:
| Q |
55 |
tattcataacatcactctcaagttcatatgaagtattgataacaatagaagag |
107 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| |||| |||||||| |
|
|
| T |
4484202 |
tattcataacatcactctctagttcattaaaagtattgaaaacattagaagag |
4484150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 4564615 - 4564651
Alignment:
| Q |
246 |
aaatatccatttgttagataactctcatctgcatatc |
282 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
4564615 |
aaatatccatttgttagatagctctgatctgcatatc |
4564651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 4571873 - 4571909
Alignment:
| Q |
246 |
aaatatccatttgttagataactctcatctgcatatc |
282 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
4571873 |
aaatatccgtttgtcagataactctcatctgcatatc |
4571909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 24103676 - 24103973
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24103676 |
caatggtgtatatagaagggaacatagagtagagagcattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctctgtgaca |
24103775 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24103776 |
tcttaccgccacttcggtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttatgcaaacct |
24103875 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatcgcaattgtaaaagtatgtcaatagttgaaacttt |
316 |
Q |
| |
|
|||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
24103876 |
ggaatcctgccaccaactttattgtctaaatatccatttgttagataactctcatctgcatattacaattgcaaaagtatgtcaatagttgaaacttt |
24103973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 24103988 - 24104043
Alignment:
| Q |
349 |
agattttaaatcatgttcccagtaataattgt-gttgtgttgtcattttgatgatg |
403 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||||||||||||||| |||||| |
|
|
| T |
24103988 |
agattttaaatcatgtttccaataataattgtggttgtgttgtcattttaatgatg |
24104043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 24107067 - 24107114
Alignment:
| Q |
34 |
aagggaacatagagtagagagtattcataacatcactctcaagttcat |
81 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
24107067 |
aagggaacatagaatagagcgtattcattacatcactctcaagttcat |
24107114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 20863298 - 20863038
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgaca |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||||| |||||||| |||||||| |||| | |
|
|
| T |
20863298 |
caatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaa |
20863199 |
T |
|
| Q |
119 |
tctatccgccacttcagtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaacct |
218 |
Q |
| |
|
|||||| | |||||| | | ||||| ||||| | |||||||||||| ||| ||||| | || | ||| |||||||| || || ||| |||||||| |
|
|
| T |
20863198 |
tctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttcgcaaacct |
20863099 |
T |
|
| Q |
219 |
cgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatc |
282 |
Q |
| |
|
|||||| | |||||||| | || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20863098 |
ggaatcc---gatcaactttagtctccaaatatccatttgttagataactctcatctgtatatc |
20863038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 1675080 - 1675167
Alignment:
| Q |
192 |
tccttcaacctaaagttttgcaaacctcgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatc |
282 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||| || ||||| | || ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1675080 |
tccttcaaccgaaagtttttcaaacctggaatccactcg---acttttgtttccaaatatccatttgttagatgtctctcatctgcatatc |
1675167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 317 - 404
Alignment:
| Q |
192 |
tccttcaacctaaagttttgcaaacctcgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatc |
282 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||| || ||||| | || ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
317 |
tccttcaaccgaaagtttttcaaacctggaatccactcg---acttttgtttccaaatatccatttgttagatgtctctcatctgcatatc |
404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 1282018 - 1282050
Alignment:
| Q |
246 |
aaatatccatttgttagataactctcatctgca |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1282018 |
aaatatccatttgttagataactctcatctgca |
1282050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 4144 - 4061
Alignment:
| Q |
19 |
caatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcatatgaagtattgataacaatag |
102 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||||| ||||| ||| | ||||||||||||| |||| |||| |||||||| |
|
|
| T |
4144 |
caatggtatataaagaagggaacatagaatagagagcattcaatacaccgctctcaagttcatcgtaagtgttgaaaacaatag |
4061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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