View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13050_high_8 (Length: 314)

Name: NF13050_high_8
Description: NF13050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13050_high_8
NF13050_high_8
[»] chr2 (2 HSPs)
chr2 (97-161)||(6019018-6019082)
chr2 (238-301)||(6018873-6018936)
[»] chr4 (1 HSPs)
chr4 (238-293)||(20944708-20944763)
[»] chr3 (2 HSPs)
chr3 (100-144)||(38009650-38009694)
chr3 (242-274)||(38009798-38009830)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 6019082 - 6019018
Alignment:
Q  97 aacttacttgcagaaaagatgattgcaggtgagtgaaactgcggaatgaagtaaacccagactac 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019082 aacttacttgcagaaaagatgattgcaggtgagtgaaactgcggaatgaagtaaacccagactac 6019018  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 6018936 - 6018873
Alignment:
Q  238 ttggtaccagattggacatttgagttctcttcccattttttcaagatcccccatttctgatttc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6018936 ttggtaccagattggacatttgagttctcttcccattttttcaagatcccccatttctgatttc 6018873  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 20944763 - 20944708
Alignment:
Q  238 ttggtaccagattggacatttgagttctcttcccattttttcaagatcccccattt 293  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  20944763 ttggtaccagattggacatttgagttctctgcccatgttttcaagatccaccattt 20944708  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 38009650 - 38009694
Alignment:
Q  100 ttacttgcagaaaagatgattgcaggtgagtgaaactgcggaatg 144  Q
    ||||||||||||||| ||||| | ||||||||||||||| |||||    
T  38009650 ttacttgcagaaaagttgattccgggtgagtgaaactgcagaatg 38009694  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 38009798 - 38009830
Alignment:
Q  242 taccagattggacatttgagttctcttcccatt 274  Q
    |||||||||||||||||||||||||| ||||||    
T  38009798 taccagattggacatttgagttctctgcccatt 38009830  T

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