View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13050_low_1 (Length: 583)
Name: NF13050_low_1
Description: NF13050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13050_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 137 - 497
Target Start/End: Complemental strand, 719599 - 719239
Alignment:
| Q |
137 |
atcctcttggtcgattatatattgccagggttagttgatttgtatgatagaattatgtaactataaatttagcttaagtctaaagagtttttgtcaagca |
236 |
Q |
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| T |
719599 |
atcctcttggtcgattatatattgtcaaggttagttgatttgtatgatagaattatgtaactataaatttagcttaagtctaaagagtttttgtcaagca |
719500 |
T |
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| Q |
237 |
ctctctaaatgaaataatcaatttaggagtttcatgtcgnnnnnnngaattaagaacataaataattcactgatataacgaaacaaagaatatatataat |
336 |
Q |
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| T |
719499 |
ctctctaaatgaaataatcaatttaggagtttcatgtcgaaaaaaagaattaagaacataaataattcactgatataacgaaacaaagaatatatataat |
719400 |
T |
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| Q |
337 |
cagctagaatcatacttaagtacacataaacccaacaaaaaaggaaattagcttcttataatcatgcccgttggttaaataagataggatgatactattt |
436 |
Q |
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| T |
719399 |
cagctagaatcatacttaagtacacataatcccaacaaaaaaggaaattagcttcttataatcatgcccgttggttaaataagataggatgatactattt |
719300 |
T |
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| Q |
437 |
gataattaaataattttctgtttaacctttgataaggatatcaattcgatctaaattgcac |
497 |
Q |
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| T |
719299 |
gataattaaataattttctgtttaacctttgataaggatatcaattcgatctaaattgcac |
719239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 719680 - 719601
Alignment:
| Q |
15 |
cagagaggaaggagagcgtttgtgttcagatattcataaactaagacacgctaaatgtagtgaaactttacaaactaaag |
94 |
Q |
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| T |
719680 |
cagagaggaaggagagcgtttgtgttcagatattcataaactaagacacgctaaatgtagtgaaactttacaaactaaag |
719601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 530 - 565
Target Start/End: Complemental strand, 719206 - 719171
Alignment:
| Q |
530 |
gatactttcaaatagttctcaattaatctgcaaata |
565 |
Q |
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| T |
719206 |
gatactttcaaatagttctcaattaatctgcaaata |
719171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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