View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13050_low_10 (Length: 280)
Name: NF13050_low_10
Description: NF13050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13050_low_10 |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0599 (1 HSPs) |
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Alignment Details
Target: scaffold0042 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 12661 - 12894
Alignment:
| Q |
1 |
ctttatagttttagtgaagtactaattaatatcgattattgatgacaacattaataattgatagtatgcgctcatacataataaattattttcaaattga |
100 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
12661 |
ctttatagttttagtgaagtactaattaat--caattattgatgacaacattaataattgatagtattcgcgcatacataataaattattttcaaattga |
12758 |
T |
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| Q |
101 |
aatttcaaccttaatttctcattttactctttataagttggtgaaatctaagaacttacggggtgaaacttggtggccatgcaaccttaggattctaaat |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12759 |
aatatcaaccttaatttctcattttactctttataagttggtgaaatctaagaacttaccgggtgaaacttggtggccatgcaaccttaggattctaaat |
12858 |
T |
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| Q |
201 |
cccattgctgtatcatttatatcttgaacctccgaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12859 |
cccattgctgtatcatttatatcttgaacctccgaa |
12894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 37959235 - 37958966
Alignment:
| Q |
1 |
ctttatagttttagtgaagtactaattaatatcgattattgatgacaacattaataattgatagtatgcgctcatacataataaattattttcaaattga |
100 |
Q |
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||||||||| |||||||||||||||||||||| |||||||| || || ||||||||||| || |||| | ||||||||||||||||| ||||||| | |
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| T |
37959235 |
ctttatagtcatagtgaagtactaattaatatcaattattgacgaaaatattaataattggtattatgtgggcatacataataaattatgatcaaattta |
37959136 |
T |
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| Q |
101 |
aa--tttcaa---ccttaatttctcattttactctttataagttggtgaaatctaagaacttacggggtgaaacttggtggccatgcaaccttaggattc |
195 |
Q |
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|| | |||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37959135 |
aaaatatcaattaccttaatttctcattttactctttataaggtggtgaaatctttgaacttaccaggtgaaacttggtggccatgcaaccttaggattc |
37959036 |
T |
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| Q |
196 |
taaatcccattgctgtatcatttatatcttgaacctccgaatttctcgcccagcaaatacctttcttagt |
265 |
Q |
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| T |
37959035 |
taaatcccattgctgtgtcgtctatatcttgaacctctgaatttctcgcccagcaaatacctttcttagt |
37958966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 12635482 - 12635745
Alignment:
| Q |
1 |
ctttatagttttagtgaagtactaattaatatcgattattgatgacaacattaataattgatagtatgcgctcatacataataaattattttcaaattga |
100 |
Q |
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||||||||| |||||||||||||||||||||| |||||||| || || |||||||||||||| ||||| | ||||||||||||||||| ||||||||| |
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| T |
12635482 |
ctttatagtcatagtgaagtactaattaatatctattattgacgaaaatattaataattgatattatgcacgcatacataataaattatgatcaaattga |
12635581 |
T |
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| Q |
101 |
aatttcaa---ccttaatttctcattttactctttataagttggtgaaatctaagaacttacggggtgaaacttggtggccatgcaaccttaggattcta |
197 |
Q |
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||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| || | |||| |
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| T |
12635582 |
aatatcaattaccttaatttctcattttactctttataatatggtgaaatctttcaacttaccgggtgaaacttggtggccatgcaacctaagcagtcta |
12635681 |
T |
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| Q |
198 |
aatcccattgctgtatcatttatatcttgaacctccgaatttctcgcccagcaaatacctttct |
261 |
Q |
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| T |
12635682 |
aatcccattgttatgtcatctatatcttgaacctatgaatttcttgcccagcaaatacctttct |
12635745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 1934 - 1802
Alignment:
| Q |
1 |
ctttatagttttagtgaagtactaattaatatcgattattgatgacaacattaataattgatagtatgcgctcatacataataaattattttcaaattga |
100 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |
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| T |
1934 |
ctttatagttttagtgaagtactaattaat--caattattgatgacaacattaataattgataatattcgcgcatacataataaattattttcaaattga |
1837 |
T |
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| Q |
101 |
aatttcaaccttaatttctcattttactctttata |
135 |
Q |
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||| ||||||||||||||||||||||||||||||| |
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| T |
1836 |
aatatcaaccttaatttctcattttactctttata |
1802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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