View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13050_low_2 (Length: 539)
Name: NF13050_low_2
Description: NF13050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13050_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 198 - 527
Target Start/End: Original strand, 7296588 - 7296916
Alignment:
| Q |
198 |
agattattatacttaaaaacattatagtcgttttcaaaaacatcttgtgcaggttttgactctttaccagtttaatatattttactttgattacaagttt |
297 |
Q |
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| T |
7296588 |
agattattatacttagatactttaatgtcgttttcaaacacgtcttgtgcaggttttgacactttaccagtttaatatattttactttgattacaagttt |
7296687 |
T |
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| Q |
298 |
ttatacgacactaataacaaataaaaatcagtgagcttaaatatcagattaattaacaaataaaaactctcacatatacactcattaaaaaagagctctt |
397 |
Q |
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| T |
7296688 |
ttatacgacactaataacaaataaaaatcagtgagcttaaatatcagattaattaacaaataaaaactctcacatatacacttattaaaaaagagctctt |
7296787 |
T |
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| Q |
398 |
taagctgtatcatgttctttagagttagagtagttatgcatatgagttgttagttactttccaattgtctaaaggttctgaaaatggtaaatacatatag |
497 |
Q |
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| T |
7296788 |
taagctgtatcatgttctctagagttagagcagttatgcatatgagttgttagttactttccaa-tgtctaaaggttctgaaaatggtaaatacatatag |
7296886 |
T |
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| Q |
498 |
atatacgagaggctgatcatgtatgagtat |
527 |
Q |
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| T |
7296887 |
atatacgagaggctgatcctgtatgagtat |
7296916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 7296392 - 7296549
Alignment:
| Q |
1 |
ttttcaacataaagacaagaggctctcatcatacaacattttgacaaagtaaaactattaaccttttcatggatgaaagggaataatacggttttgtctt |
100 |
Q |
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| T |
7296392 |
ttttcaacataaagacaagaggctctgatcatgcaactttttgacaaagtaaaactattaaccttttcatggatgaaagggaataatacggttttgtttt |
7296491 |
T |
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| Q |
101 |
ttgaatgtgaactttggtggcataatccaattatttgtatgagttatgtcacataatc |
158 |
Q |
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| T |
7296492 |
ctgaatgtgaactttggtggcataatccaattatttgtatgagttatgttacataatc |
7296549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 31712578 - 31712489
Alignment:
| Q |
56 |
tattaaccttttcatggatgaaagggaataatacggttttgtcttttgaatgtgaactttggtggcataatccaattatttgtatgagtt |
145 |
Q |
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| T |
31712578 |
tattaacctcttcatggttgaaagtgaaaatcacagttttgtcttttgatcttcaactatggtggcatagcccaattgtttgtatgagtt |
31712489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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