View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13050_low_6 (Length: 332)
Name: NF13050_low_6
Description: NF13050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13050_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 38277945 - 38278244
Alignment:
| Q |
15 |
gagtgcattttatccatataagggcctgcaaatgaaagttgtcaaccaaagatatccatggcctacaaacacgagattcagttgacacatatatcatatt |
114 |
Q |
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| T |
38277945 |
gagtgcattttatccatataagggcctgcaaatgaaagttgtcaaccaaagatatccatggcctacaaacacgagattcagttgacacatatatcatatt |
38278044 |
T |
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| Q |
115 |
catcatatggatgtggtggctgcataacctttcaataatgtaacactattgcttaaattatttaaatatatcacacgagtgaacttatgatagggtccta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38278045 |
catcatatggatgtggtggctgcataacctttcaataatgtaacactattgcttaaattatttaaatatatcacacgagtgaacttatgatagggtccta |
38278144 |
T |
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| Q |
215 |
ttattccatgttttggtatttgttttgtgacatttgtcctcatttaatttaggccaacctggcttacattgtatgctaaaaagcatttatatggaccttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38278145 |
ttattccatgttttggtatttgttttgtgacatttgtcctcatttaatttaggccaacctggcttacattgtatgctaaaaagcatttatatggaccttt |
38278244 |
T |
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