View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13050_low_7 (Length: 319)
Name: NF13050_low_7
Description: NF13050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13050_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 47075005 - 47074685
Alignment:
| Q |
1 |
ccgttacttattgagtgttttgatttcaatagcagtggaaatcatgtacttatagggtaatgtcaaattatatagctttttgtttagcctaaacttcttt |
100 |
Q |
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| T |
47075005 |
ccgttacttattgagtgttttgatttcaatagcagtggaaatcatgcacttatagggtaatgtcaaattatatagctttttgtttagcctaaacttcttt |
47074906 |
T |
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| Q |
101 |
aggctttacactttctag--------------atgcaaaatagtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcagaccttgaaa |
186 |
Q |
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| T |
47074905 |
aggctttacactttctagttcatactttatagatgcaaaatagtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcagaccttgaaa |
47074806 |
T |
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| Q |
187 |
agctataccaagagagaaaaggcgcaaattttgtcatgcgatcaacacgcaatggacaagagaaggtattcattggtccctgaaatcgaatttgtgttat |
286 |
Q |
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| T |
47074805 |
agctataccaagagagaaaaggcgcaaattttgtcatgcgatccacacgcaatggacaagagaaggtattcattggtccctgaaatcgaatttgtgttat |
47074706 |
T |
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| Q |
287 |
attttggatttgatctctgct |
307 |
Q |
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| T |
47074705 |
attttggatttgatctctgct |
47074685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 47056896 - 47056763
Alignment:
| Q |
128 |
agtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcagaccttgaaaagctataccaagagagaaaaggcgcaaattttgtcatgcga |
227 |
Q |
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| T |
47056896 |
agtgacatcaaagtttgttgccatcagtaaaatgcagaaaacaatagcagaccttgaaaagctatgcaatgagagaaaaggtgtgaattttgtcatgcca |
47056797 |
T |
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| Q |
228 |
tcaacacgcaatggacaagagaaggtattcattg |
261 |
Q |
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| T |
47056796 |
tccaaacgcaaaggacaagagaaggtgttcattg |
47056763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 47057009 - 47056945
Alignment:
| Q |
8 |
ttattgagtgttttgatttcaatagcagtggaaatcatgtacttatagggtaatgtcaaattata |
72 |
Q |
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|||| ||||||||||||||||||| ||| || ||||||||||| || |||||||||||||||||| |
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| T |
47057009 |
ttatcgagtgttttgatttcaatatcagcggcaatcatgtactaatcgggtaatgtcaaattata |
47056945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 18230399 - 18230687
Alignment:
| Q |
7 |
cttattgagtgttttgatttcaatagcagtggaaatcatgtacttatagggtaatgtcaaattatatagcttttt----gtttagcctaaacttctttag |
102 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| | ||| | ||||||||||||| | ||||| |
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| T |
18230399 |
cttattgagtgttttgatttcaatagcagcggcaatcatgtacttatcgggtaatgtcaaattatattgttttattttcgtttagcctaaacatttttag |
18230498 |
T |
|
| Q |
103 |
gctttacactttctag------------------atgcaaaatagtgacatcaatgtttgttggcaacagtaaactgcaaaaatcagtagcagaccttga |
184 |
Q |
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| T |
18230499 |
gctttacactttctagtccatatactatatatagatgcaaaatactgacatcaaagtttgttgccgacagtaaactgaaaaaatcagtagcagaccttga |
18230598 |
T |
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| Q |
185 |
aaagctataccaagagagaaaaggcgcaaattttgtcatgcgatcaacacgcaatggacaagagaaggtattcattggtccctgaaatc |
273 |
Q |
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||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| |||||| |||| |
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| T |
18230599 |
aaagctataccaagaaaaaaaaggcgcaaattttgtcatgccatccacacgcaatggacaagagaaggtgttcattgatccctgcaatc |
18230687 |
T |
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